Browse Element(s) Details


Os.11766.1.S1_at

Description gb:AY062209.1
DB_XREF= gi:25989331
GEN=CIGR1
TID=Os.11766.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11766 (NCBI UniGene Cluster)
DEF=Oryza sativa chitin-inducible gibberellin-responsive protein (CIGR1) mRNA, complete cds.
PROD=chitin-inducible gibberellin-responsive protein
FL= gb:AY062209.1 gb:AK069266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3617011/11Chitin-inducible gibberellin-responsive protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36130Os.13874.4.S1_at8/117+21588126..21589281Histone H2A, putative, expressed
LOC_Os07g36140Os.12592.1.S1_at11/117+21590798..21591895Histone H2A, putative, expressed
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed
LOC_Os07g36160NANA7+21604384..21604614hypothetical protein
LOC_Os07g36170Os.11766.1.S1_at11/117+21613259..21618622Chitin-inducible gibberellin-responsive protein 1, putative, expressed
LOC_Os07g36180OsAffx.16581.1.S1_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.15739.1.S1_s_at11/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36180Os.14454.1.A1_at1/117+21619770..21622727pentatricopeptide, putative, expressed
LOC_Os07g36190Os.2357.1.S1_at10/117+21623925..21627102Isopentenyl-diphosphate delta-isomerase I, putative, expressed
LOC_Os07g36200Os.48958.1.S1_s_at4/117+21627777..21631409expressed protein
LOC_Os07g36210Os.52465.1.S1_at9/117+21632111..21634912expressed protein
LOC_Os07g36220Os.5139.2.S1_x_at1/117+21638888..21640543hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11766.1.S1_at--54--1991Chr07:21617353..21617377 (25 bp)
ACTCCGCCATGTTCGAGTCGATCGA
LOC_Os07g36170
Os.11766.1.S1_at--604--2851Chr07:21617508..21617532 (25 bp)
AAGTCGAGGCTGACCATGGCCGGCT
LOC_Os07g36170
Os.11766.1.S1_at--1108--8831Chr07:21617569..21617593 (25 bp)
TGATAAGGAAGCTTCTCGCCTGCTA
LOC_Os07g36170
Os.11766.1.S1_at--753--4471Chr07:21617586..21617610 (25 bp)
GCCTGCTACTCCGATAAATACACAT
LOC_Os07g36170
Os.11766.1.S1_at--682--1611Chr07:21617656..21617680 (25 bp)
AGCTGATATCTGCTTCTGCGTGGCA
LOC_Os07g36170
Os.11766.1.S1_at--829--231Chr07:21617720..21617744 (25 bp)
ATATATATACATACCGATTCCCTGG
LOC_Os07g36170
Os.11766.1.S1_at--127--6591Chr07:21617735..21617759 (25 bp)
GATTCCCTGGTCCAATTTACAGAAT
LOC_Os07g36170
Os.11766.1.S1_at--956--2971Chr07:21617757..21617781 (25 bp)
AATGATACCCTTTGATGTACCCTCA
LOC_Os07g36170
Os.11766.1.S1_at--848--6271Chr07:21617770..21617794 (25 bp)
GATGTACCCTCAGTTTGATTGACAG
LOC_Os07g36170
Os.11766.1.S1_at--326--4671Chr07:21617794..21617818 (25 bp)
GCGGGTGTTGCCTTCATTTATAGAC
LOC_Os07g36170
Os.11766.1.S1_at--239--8771Chr07:21617885..21617909 (25 bp)
TGTATGATGTATCCATGGCTGCCAT
LOC_Os07g36170
Target Sequence 
ACTCCGCCATGTTCGAGTCGATCGACNGCCAACCTGCCGCGGGACAACAAGGAGAGGATCAGCGTGGAGCAGCACTGCCT
CGCCAAGGNACATCGTCAACATCATCGCCTGCGAGGGGAAGGACAGGGTGGAGAGGCATGAGCTGCTTGGCAAGTGGAAG
TCGAGGCTGACCATGGCCGGCTTCAGGCCTTACCCGTTGAGCTCGTACGTCAACTCGGTGATAAGGAAGCTTCTCGCCTG
CTACTCCGATAAATACACATTGGATGAGAAGGACGGCGCGATGCTTCTCGGCTGGAGGAGCAGAAAGCTGATATCTGCTT
CTGCGTGGCACTGACAGTAGTATGTTGAGAAGAAGAAATGATAGAGAGCATATATATACATACCGATTCCCTGGTCCAAT
TTACAGAATGATACCCTTTGATGTACCCTCAGTTTGATTGACAGCGGGTGTTGCCTTCATTTATAGACCAGGATCAAACA
TTGACATTAGATTTGTAGAGAAGTTGTATGATAATAATTTTCTTTGCGATTTCAATGTATGATGTATCCATGGCTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis