Browse Element(s) Details


Os.11786.1.S1_at

Description gb:AK063318.1
DB_XREF= gi:32973336
TID=Os.11786.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G11, full insert sequence.
FL= gb:AK063318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1590011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11786.1.S1_at--184--931Chr01:8946625..8946649 (25 bp)
AGGAGAAATCACTGTGGGTTCCCAA
LOC_Os01g15900
Os.11786.1.S1_at--434--391Chr01:8946618..8946642 (25 bp)
ATCACTGTGGGTTCCCAAGACGCTC
LOC_Os01g15900
Os.11786.1.S1_at--152--5371Chr01:8946535..8946591 (25 bp)
GAAGAGCTCCATCTGGCATCTTCAA
LOC_Os01g15900
Os.11786.1.S1_at--614--1371Chr01:8946533..8946589 (25 bp)
AGAGCTCCATCTGGCATCTTCAAGC
LOC_Os01g15900
Os.11786.1.S1_at--505--491Chr01:8946525..8946547 (23 bp)
ATCTGGCATCTTCAAGCCGTTCCAG
LOC_Os01g15900
Os.11786.1.S1_at--86--10331Chr01:8946515..8946539 (25 bp)
TTCAAGCCGTTCCAGTCCAAAGGTG
LOC_Os01g15900
Os.11786.1.S1_at--162--2671Chr01:8946512..8946536 (25 bp)
AAGCCGTTCCAGTCCAAAGGTGAGA
LOC_Os01g15900
Os.11786.1.S1_at--1037--4231Chr01:8946509..8946533 (25 bp)
CCGTTCCAGTCCAAAGGTGAGAGCA
LOC_Os01g15900
Os.11786.1.S1_at--272--1751Chr01:8946145..8946169 (25 bp)
ACCTGGTTTAGCTCTCCTAGTATAT
LOC_Os01g15900
Os.11786.1.S1_at--621--3871Chr01:8946143..8946167 (25 bp)
CTGGTTTAGCTCTCCTAGTATATTA
LOC_Os01g15900
Os.11786.1.S1_at--266--6831Chr01:8946140..8946164 (25 bp)
GTTTAGCTCTCCTAGTATATTATAC
LOC_Os01g15900
Target Sequence 
AGGAGAAATCACTGTGGGTTCCCAAGACGCTCCGCATCGACGATCCCGACGAGGCGGCGAAGAGCTCCATCTGGCATCTT
CAAGCCGTTCCAGTCCAAAGGTGAGAGCAAAGGCCAAGCAGCATCAGAGACTCGTCCTGCTCGTGCTCTTAAGGCAAACC
CAGCTGCATTGTCGCGGTCGCAGTCGTTCCAGGAGACTTCTTGACTCTTTACCTGTTGAATTTCCTATAGTTTTTGTCAG
CACAGTGTGTGTACTGTAAAATGTGTATAGCAGTAGAGGTTTTGCGGTATTCAGAAGGATCAGGAGAGAGCTTTTTGTGC
AGCCACTAACTTGAGGTGGATAGGAGTTGCAAAGGGCTTTCATGAGAAACTACATCGAGATGTATATGTATTGTAAATAC
TTGACAAACTGGTTGTGTACATCTAGGTTAAGTCAGGAAAATACACTCACCTGGTTTAGCTCTCCTAGTATATTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis