Browse Element(s) Details


Os.11786.2.S1_at

Description gb:C23582
DB_XREF= gi:1944260
DB_XREF=C23582
CLONE=S11122_1Z
TID=Os.11786.2
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1590011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11786.2.S1_at--1050--151Chr01:8946122..8946146 (25 bp)
ATTATACTACATTGGTATGTCTATC
LOC_Os01g15900
Os.11786.2.S1_at--467--331Chr01:8946119..8946143 (25 bp)
ATACTACATTGGTATGTCTATCTTT
LOC_Os01g15900
Os.11786.2.S1_at--101--9911Chr01:8946118..8946142 (25 bp)
TACTACATTGGTATGTCTATCTTTG
LOC_Os01g15900
Os.11786.2.S1_at--893--2011Chr01:8946117..8946141 (25 bp)
ACTACATTGGTATGTCTATCTTTGT
LOC_Os01g15900
Os.11786.2.S1_at--285--3731Chr01:8946116..8946140 (25 bp)
CTACATTGGTATGTCTATCTTTGTT
LOC_Os01g15900
Os.11786.2.S1_at--932--9871Chr01:8946115..8946139 (25 bp)
TACATTGGTATGTCTATCTTTGTTT
LOC_Os01g15900
Os.11786.2.S1_at--718--2071Chr01:8946114..8946138 (25 bp)
ACATTGGTATGTCTATCTTTGTTTT
LOC_Os01g15900
Os.11786.2.S1_at--98--3611Chr01:8946113..8946137 (25 bp)
CATTGGTATGTCTATCTTTGTTTTT
LOC_Os01g15900
Os.11786.2.S1_at--578--31Chr01:8946112..8946136 (25 bp)
ATTGGTATGTCTATCTTTGTTTTTG
LOC_Os01g15900
Os.11786.2.S1_at--835--10851Chr01:8946111..8946135 (25 bp)
TTGGTATGTCTATCTTTGTTTTTGA
LOC_Os01g15900
Os.11786.2.S1_at--303--8591Chr01:8946110..8946134 (25 bp)
TGGTATGTCTATCTTTGTTTTTGAA
LOC_Os01g15900
Target Sequence 
ATTATACTACATTGGTATGTCTATCTTTGTTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11786.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis