Browse Element(s) Details


Os.11798.1.S1_at

Description gb:AK101193.1
DB_XREF= gi:32986402
TID=Os.11798.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030I03, full insert sequence.
FL= gb:AK101193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4029011/11indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40260Os.56998.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40260Os.37844.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g40280OsAffx.5583.1.S1_at11/117+24144082..24144708hypothetical protein
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11798.1.S1_at--519--1751Chr07:24148271..24148295 (25 bp)
ACCTCGTCGTTGGACCGTGTCCAAG
LOC_Os07g40290
Os.11798.1.S1_at--1140--8091Chr07:24148260..24148284 (25 bp)
GGACCGTGTCCAAGAATCTGAAGTA
LOC_Os07g40290
Os.11798.1.S1_at--1120--10051Chr07:24148237..24148261 (25 bp)
TAGTAGAAGCCGGATGCCTCCACCT
LOC_Os07g40290
Os.11798.1.S1_at--853--6351Chr07:24148225..24148249 (25 bp)
GATGCCTCCACCTAAAAACACTTAT
LOC_Os07g40290
Os.11798.1.S1_at--427--6251Chr07:24148177..24148201 (25 bp)
GATGGTTGCTGTCAACTCTGTCAGT
LOC_Os07g40290
Os.11798.1.S1_at--386--7091Chr07:24148167..24148191 (25 bp)
GTCAACTCTGTCAGTTAGTGGCAAG
LOC_Os07g40290
Os.11798.1.S1_at--881--3431Chr07:24148156..24148180 (25 bp)
CAGTTAGTGGCAAGAGGGTACCTCT
LOC_Os07g40290
Os.11798.1.S1_at--260--8051Chr07:24148123..24148147 (25 bp)
GGAGAGAACTGCAGAACGAACGGAA
LOC_Os07g40290
Os.11798.1.S1_at--249--8731Chr07:24148087..24148111 (25 bp)
TGTAAGAGGTTACCACTAGTAGTAC
LOC_Os07g40290
Os.11798.1.S1_at--536--3711Chr07:24148072..24148096 (25 bp)
CTAGTAGTACTGTTTGTCTGTATCA
LOC_Os07g40290
Os.11798.1.S1_at--1058--6531Chr07:24148040..24148064 (25 bp)
GATTATAATTTAACCTGTCCTCCAA
LOC_Os07g40290
Target Sequence 
ACCTCGTCGTTGGACCGTGTCCAAGAATCTGAAGTAGTAGAAGCCGGATGCCTCCACCTAAAAACACTTATCTGTTATTT
TTGGAATTAATTTTGATGGTTGCTGTCAACTCTGTCAGTTAGTGGCAAGAGGGTACCTCTGATGTGAGGGAGAGAACTGC
AGAACGAACGGAAGAAAGTGTTGATGTAAGAGGTTACCACTAGTAGTACTGTTTGTCTGTATCAGGAATGTGATTATAAT
TTAACCTGTCCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis