Browse Element(s) Details


Os.11820.1.S2_at

Description gb:AK065051.1
DB_XREF= gi:32975069
TID=Os.11820.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001I18, full insert sequence.
FL= gb:AK065051.1 gb:AK098853.1 gb:AK098974.1 gb:AK064869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3997011/11F-box protein FBL2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39920Os.17981.1.S1_at11/112+24133902..24140836AT hook motif family protein, expressed
LOC_Os02g39930Os.10853.1.S1_at11/112+24146244..24147204Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os02g39940OsAffx.24654.1.S1_at10/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.20851.1.A1_x_at2/112+24148152..24150581hypothetical protein
LOC_Os02g39940Os.55580.1.S1_at1/112+24148152..24150581hypothetical protein
LOC_Os02g39950Os.52383.1.S1_at11/112+24152624..24157204EF hand family protein, expressed
LOC_Os02g39960OsAffx.24655.1.S1_at11/112+24157684..24159784exostosin family protein, putative
LOC_Os02g39970Os.11820.1.S1_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39970Os.11820.1.S2_at11/112+24160960..24168376F-box protein FBL2, putative, expressed
LOC_Os02g39980OsAffx.2922.1.S1_at11/112+24170601..24171097hypothetical protein
LOC_Os02g39990Os.55784.1.S1_at11/112+24172551..24175424meprin and TRAF homology domain-containing protein, putative, expressed
LOC_Os02g40000Os.10224.1.S1_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40000OsAffx.24656.1.S1_s_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11820.1.S2_at--243--4931Chr02:24161515..24161539 (25 bp)
GCTTGATTCCTGCAGGGTCACGACA
LOC_Os02g39970
Os.11820.1.S2_at--533--2631Chr02:24161454..24161478 (25 bp)
AACCTGATAAGCGTTCGACCCGAGT
LOC_Os02g39970
Os.11820.1.S2_at--665--6711Chr02:24161442..24161466 (25 bp)
GTTCGACCCGAGTAGCTGGACACTA
LOC_Os02g39970
Os.11820.1.S2_at--896--4711Chr02:24161428..24161452 (25 bp)
GCTGGACACTACATGATCACCTGTA
LOC_Os02g39970
Os.11820.1.S2_at--623--4931Chr02:24161322..24161346 (25 bp)
GCATTTGTTGGCCTAAAACCGGGAG
LOC_Os02g39970
Os.11820.1.S2_at--261--100110Chr11:14066333..14066357 (25 bp)
TAGCTCATGAGGTGAGGGACCCCTC
NONE
Os.11820.1.S2_at--451--9711Chr02:24161179..24161203 (25 bp)
TCAACAGCATTTACTAGGTCCTTCC
LOC_Os02g39970
Os.11820.1.S2_at--847--10151Chr02:24161145..24161169 (25 bp)
TATCGGGATCTTTTCGTTTTCAAGT
LOC_Os02g39970
Os.11820.1.S2_at--422--9251Chr02:24161037..24161061 (25 bp)
TCCTCGCCATTGTGGGATGCTTATG
LOC_Os02g39970
Os.11820.1.S2_at--711--6931Chr02:24161011..24161035 (25 bp)
GTAGTGTGGTGTACAGTGCCGCATT
LOC_Os02g39970
Os.11820.1.S2_at--735--2131Chr02:24160999..24161023 (25 bp)
ACAGTGCCGCATTTTCTGTGGCAGT
LOC_Os02g39970
Target Sequence 
GCTTGATTCCTGCAGGGTCACGACAAGTGAGGTGAAGAAGCTGCAGGCGACGGTGCTCCCCAACCTGATAAGCGTTCGAC
CCGAGTAGCTGGACACTACATGATCACCTGTAAATAATCATCTGGATGGCTTCATGTAGATAGCTTTGCAAGGGCCTGGA
TTGAAGCCAGATTAATAAGTAAAGTCTATGGTAGCATTTGTTGGCCTAAAACCGGGAGACGTTGGCCCAACCGGGAGAAA
GCCTTTCTACACCCCAAAAGCTAGCTCATGAGGTGAGGGACCCCTCCCCTTTTAAGTTGGTGCCACTCCCCCTAAACTTT
CAATGTGGGACTATTCTCAACAGCATTTACTAGGTCCTTCCTGCTCCGTTTATCGGGATCTTTTCGTTTTCAAGTACTGA
AAAAATTACTTGTATTTCCTTCACTCCGTGTACCCTCCAAGGCGTGACGGGAAGGAACAAAATTGTAAATATTGCGCTTC
CTCGCCATTGTGGGATGCTTATGTGTAGTGTGGTGTACAGTGCCGCATTTTCTGTGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11820.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis