Browse Element(s) Details


Os.11841.1.S1_at

Description gb:AK066210.1
DB_XREF= gi:32976228
TID=Os.11841.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056J23, full insert sequence.
FL= gb:AK061598.1 gb:AK066210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4519011/11PGR5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45170Os.49211.1.A1_at11/118+28222515..28227952Carboxyl-terminal proteinase, putative, expressed
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed
LOC_Os08g45240Os.27448.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45240Os.35508.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009773biological_processphotosynthetic electron transport in photosystem I
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11841.1.S1_at--137--7411Chr08:28245582..28245606 (25 bp)
GTGATCACCGAGTTCTGCAAGACCA
LOC_Os08g45190
Os.11841.1.S1_at--502--8291Chr08:28245633..28245657 (25 bp)
GGCTTGATCCGCCTTGCCAAGAAGA
LOC_Os08g45190
Os.11841.1.S1_at--491--5971Chr08:28245663..28245687 (25 bp)
GAGAAGCTCGGTTTCCTTGCCTGAT
LOC_Os08g45190
Os.11841.1.S1_at--689--3151Chr08:28245703..28245727 (25 bp)
AATTCCTACTAGCTCATTTGATTGG
LOC_Os08g45190
Os.11841.1.S1_at--490--6611Chr08:28245722..28245746 (25 bp)
GATTGGTGTGGATTTCCTCTCTGAA
LOC_Os08g45190
Os.11841.1.S1_at--102--10671Chr08:28245784..28245808 (25 bp)
TTCCTCCCTGCGTATAAATGTGTCT
LOC_Os08g45190
Os.11841.1.S1_at--692--8671Chr08:28245802..28245826 (25 bp)
TGTGTCTTGTGCGTACGTATACCTC
LOC_Os08g45190
Os.11841.1.S1_at--540--9571Chr08:28245828..28245852 (25 bp)
TCTTCTGACCTTCAATTCCATCCAT
LOC_Os08g45190
Os.11841.1.S1_at--545--7071Chr08:28245891..28245915 (25 bp)
GTAATACGCGCATGCATGAACGAAT
LOC_Os08g45190
Os.11841.1.S1_at--95--7091Chr08:28246035..28246059 (25 bp)
GTCAAGCTCCAATCGGATGGATCTG
LOC_Os08g45190
Os.11841.1.S1_at--344--6411Chr08:28246054..28246078 (25 bp)
GATCTGGATCTCCTAGTCAATCTTT
LOC_Os08g45190
Target Sequence 
GTGATCACCGAGTTCTGCAAGACCATCGGCGCCGACGCCAAGCAGAGGCAGGGCTTGATCCGCCTTGCCAAGAAGAACGG
CGAGAAGCTCGGTTTCCTTGCCTGATCGACATGCCCTTCCTAATTCCTACTAGCTCATTTGATTGGTGTGGATTTCCTCT
CTGAATGAATGAATTTCCTGTAGCTAGCTAGCCAGCCGCGCCTTCCTCCCTGCGTATAAATGTGTCTTGTGCGTACGTAT
ACCTCCTCTTCTGACCTTCAATTCCATCCATCCATGCCATGGCGGCATGAACGAATGAATTAGTAGTAAGTAATACGCGC
ATGCATGAACGAATGAATAATATACTATATAATGCGTGTATACAGACACTAGNGCTGGCTAGNATGTATGATGATCATGA
TGTATATGTATGAGACTGAGACTGTATGTAGCCAGTTAAGCGACATCANTTGNCGTCAAGCTCCAATCGGATGGATCTGG
ATCTCCTAGTCAATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis