Browse Element(s) Details


Os.11858.1.S1_at

Description gb:AK066562.1
DB_XREF= gi:32976580
TID=Os.11858.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074L13, full insert sequence.
FL= gb:AK066562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5808011/11folate/biopterin transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58050Os.28088.1.S1_at11/113+32984458..3298634240S ribosomal protein S18, putative, expressed
LOC_Os03g58060Os.19368.1.S1_at11/113+32988357..329993555'-3' exoribonuclease, putative, expressed
LOC_Os03g58070Os.14883.1.S1_a_at11/113+33000291..33003846hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os03g58080Os.11858.1.S1_at11/113+33004350..33009554folate/biopterin transporter family protein, expressed
LOC_Os03g58090Os.11704.1.S1_at11/113+33010651..33013508expressed protein
LOC_Os03g58100Os.7346.1.S1_at11/113+33017731..33019745pentatricopeptide, putative, expressed
LOC_Os03g58110Os.26543.1.S1_at11/113+33022788..33024486Leucine Rich Repeat family protein, expressed
LOC_Os03g58120OsAffx.13537.1.S1_at11/113+33030388..33034068expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008517molecular_functionfolic acid transporter activity
GO:0015231molecular_function5-formyltetrahydrofolate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11858.1.S1_at--15--6611Chr03:33004873..33004897 (25 bp)
GATTGTCGTGTGCAATCTCAGCTCC
LOC_Os03g58080
Os.11858.1.S1_at--802--1251Chr03:33004771..33004795 (25 bp)
AGATTATCTCCAAGCATCGGTCCTA
LOC_Os03g58080
Os.11858.1.S1_at--131--9011Chr03:33004744..33004768 (25 bp)
TGAATGCAGGACATCCAATCGCCTC
LOC_Os03g58080
Os.11858.1.S1_at--700--10671Chr03:33004662..33004686 (25 bp)
TTGCAATGTTGATCACCCTACCGAA
LOC_Os03g58080
Os.11858.1.S1_at--179--7911Chr03:33004607..33004631 (25 bp)
GGTTCCATGGAGATATACGCCTCAT
LOC_Os03g58080
Os.11858.1.S1_at--694--4451Chr03:33004589..33004613 (25 bp)
GCCTCATGGATTAGCGGACTTGCCG
LOC_Os03g58080
Os.11858.1.S1_at--335--5691Chr03:33004573..33004597 (25 bp)
GACTTGCCGCGGTTGTTAACTGGTG
LOC_Os03g58080
Os.11858.1.S1_at--589--9631Chr03:33004542..33004566 (25 bp)
TCAGGATTGTGTGCCGTCAGAGCAT
LOC_Os03g58080
Os.11858.1.S1_at--21--7311Chr03:33004491..33004515 (25 bp)
GTGCAGGTACGACCTTTTGTTCTTT
LOC_Os03g58080
Os.11858.1.S1_at--78--5351Chr03:33004450..33004474 (25 bp)
GAAGAGTTTCCCGTGTATTCTGCCA
LOC_Os03g58080
Os.11858.1.S1_at--1037--10211Chr03:33004435..33004459 (25 bp)
TATTCTGCCACATCCAACCGATAGA
LOC_Os03g58080
Target Sequence 
GATTGTCGTGTGCAATCTCAGCTCCCTGCTGCCTCTACCTCTTCTGGGCCTCCTCCCGGATGAATCACCCGGTGTAGATA
ATGAGCAAACAAAAGTCGATTGAGATTATCTCCAAGCATCGGTCCTACTTGAATGCAGGACATCCAATCGCCTCTACGTG
AACTCAGCGGCGCAGGGGAATTGGGAATCAGGCTGCAGCTGACCTTGGCCGTTGCAATGTTGATCACCCTACCGAATAGT
ATGTTTAGGGTGATCAGTTGATGATTGGTTCCATGGAGATATACGCCTCATGGATTAGCGGACTTGCCGCGGTTGTTAAC
TGGTGGTTAGGTCAGGATTGTGTGCCGTCAGAGCATGGACATGGAAGCCGCAGTGTACACTAGTGCAGGTACGACCTTTT
GTTCTTTACCATGAAAAACGGCAGAAGAGTTTCCCGTGTATTCTGCCACATCCAACCGATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis