Browse Element(s) Details


Os.11862.1.S1_at

Description gb:AK099785.1
DB_XREF= gi:32984994
TID=Os.11862.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096H01, full insert sequence.
FL= gb:AK099785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5259411/11NOT2/NOT3/NOT5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52510OsAffx.31069.1.S1_x_at1/113+30081866..30085006hypothetical protein
LOC_Os03g52520NANA3+30085958..30086560retrotransposon protein, putative, unclassified
LOC_Os03g52530NANA3+30089494..30092048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52540NANA3+30092514..30095417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52550NANA3+30095943..30098868retrotransposon protein, putative, unclassified
LOC_Os03g52560OsAffx.13470.1.S1_at10/113+30099907..30101829Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os03g52570OsAffx.3584.1.S1_x_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.3584.1.S1_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.30560.1.S1_x_at3/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.27222.1.S1_x_at1/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11862.1.S1_at--238--4331Chr03:30108564..30108588 (25 bp)
CCATCTTCGTCCCAAACTGTTAGGG
LOC_Os03g52594
Os.11862.1.S1_at--1106--2392Chr07:23928574..23929029 (25 bp)
AAACATTTCTTGATACCTCCTGCTC
NONE
Os.11862.1.S1_at--176--3231Chr03:30108425..30108449 (25 bp)
CAAGAACCTTCTTTCATCGGGAGGA
LOC_Os03g52594
Os.11862.1.S1_at--1026--6111Chr03:30108381..30108405 (25 bp)
GAGGGCACAATACCATTGCCTAACT
LOC_Os03g52594
Os.11862.1.S1_at--1048--2531Chr03:30107815..30107839 (25 bp)
AACTCATAGCTAGACCATGCCGATC
LOC_Os03g52594
Os.11862.1.S1_at--790--9071Chr03:30107753..30107777 (25 bp)
TGCTTAGCCCTTGTAATTAGAGTAA
LOC_Os03g52594
Os.11862.1.S1_at--463--10311Chr03:30107711..30107735 (25 bp)
TTTCTGTTTCATACCCTTTGAGCAA
LOC_Os03g52594
Os.11862.1.S1_at--858--6611Chr03:30107611..30107635 (25 bp)
GTTGGCTTTGCACATATCGACGTTA
LOC_Os03g52594
Os.11862.1.S1_at--999--7751Chr03:30107597..30107621 (25 bp)
TATCGACGTTAGTGTTTACCCTTCT
LOC_Os03g52594
Os.11862.1.S1_at--402--211Chr03:30107559..30107583 (25 bp)
ATTTGCAGACAATACTAGGCGCCAG
LOC_Os03g52594
Os.11862.1.S1_at--740--9891Chr03:30107547..30107571 (25 bp)
TACTAGGCGCCAGTTTGGTTTGATG
LOC_Os03g52594
Target Sequence 
CCATCTTCGTCCCAAACTGTTAGGGGAAACATTTCTTGATACCTCCTGCTCAAGAACCTTCTTTCATCGGGAGGAAGAAA
CTTTTGTTTATGCTGAGGGCACAATACCATTGCCTAACTCATAGGGACAGAGAAAACTCATAGCTAGACCATGCCGATCT
GCAGAGGGGAGGCTGCAGAACAAAAGCGGGAATGCCTGCTTAGCCCTTGTAATTAGAGTAAAATGGTGAAGGTTTCATTT
TCTGTTTCATACCCTTTGAGCAAAAGTTCCTTTAGAACTTCCCAACTTTTAGGAATAAAAGCTTTCTTTACCGTTAAAGC
TTCTGGTGANGAAACTTGGTTGGCTTTGCACATATCGACGTTAGTGTTTACCCTTCTTTTTAAAGAGTTAATTTGCAGAC
AATACTAGGCGCCAGTTTGGTTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis