Browse Element(s) Details


Os.11903.1.S1_at

Description gb:AK107194.1
DB_XREF= gi:32992403
TID=Os.11903.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A07, full insert sequence.
FL= gb:AK107194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4143811/11Protein Z, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41390Os.49588.1.S1_at11/113+22991100..22991972Zinc finger, C2H2 type family protein, expressed
LOC_Os03g41394OsAffx.22898.1.S1_at1/113+22995114..22995891NA
LOC_Os03g41400NANA3+23000000..23001550hypothetical protein
LOC_Os03g41419OsAffx.3473.1.S1_x_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41419Os.50445.1.S1_at11/113+23002830..23008107Serpin family protein, expressed
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41500OsAffx.13287.1.S1_at11/113+23037306..23037572hypothetical protein
LOC_Os03g41510Os.11464.1.S1_at11/113+23040880..23044899oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11903.1.S1_at--1162--6691Chr03:23022337..23022361 (25 bp)
GTTCGAAGGCTGATCTTACTGGGAT
LOC_Os03g41438
Os.11903.1.S1_at--921--9551Chr03:23022350..23022374 (25 bp)
TCTTACTGGGATGGTGGGTTCTCCA
LOC_Os03g41438
Os.11903.1.S1_at--902--7891Chr03:23022366..23022390 (25 bp)
GGTTCTCCAGAGAGACATAACCTGT
LOC_Os03g41438
Os.11903.1.S1_at--335--2231Chr03:23022409..23022433 (25 bp)
ACAAGTCGTTCGTCCAGGTGGATGA
LOC_Os03g41438
Os.11903.1.S1_at--930--6431Chr03:23022513..23022537 (25 bp)
GATCATCCGTTCCTGTTCTTGATCA
LOC_Os03g41438
Os.11903.1.S1_at--971--8431Chr03:23022570..23022594 (25 bp)
GGCCATGTGGTGAATCCACTTCTGT
LOC_Os03g41438
Os.11903.1.S1_at--358--7351Chr03:23022579..23022603 (25 bp)
GTGAATCCACTTCTGTGATCAGGGA
LOC_Os03g41438
Os.11903.1.S1_at--161--5291Chr03:23022610..23022634 (25 bp)
GAATGGGTGTTGCAATATACTGTAG
LOC_Os03g41438
Os.11903.1.S1_at--97--5071Chr03:23022639..23022663 (25 bp)
GCAGCATTTGATCATGGTGACTTCT
LOC_Os03g41438
Os.11903.1.S1_at--174--10131Chr03:23022671..23022695 (25 bp)
TATGACAAATGTTCTGTGTGTGTTT
LOC_Os03g41438
Os.11903.1.S1_at--117--351Chr03:23022743..23022767 (25 bp)
ATAAATGAGATGAGACTCGCTGGTC
LOC_Os03g41438
Target Sequence 
GTTCGAAGGCTGATCTTACTGGGATGGTGGGTTCTCCAGAGAGACATAACCTGTTCGTTTNCATCCCTTTTCCACAAGTC
GTTCGTCCAGGTGGATGAGGAAGGCNNCCGAGGCTGNTGCTGCATNTGCAGCAGTGGTCNAGTTNTAGGTCAGCTCCNGT
AACCGTGGANTTCGTTGCGGATCATCCGTTCCTGTTCTTGATCAGGGAGGACATGACAGGTGTGGTGCTGTTCATNGGCC
ATGTGGTGAATCCACTTCTGTGATCAGGGAAGNCAAGAATGGGTGTTGCAATATACTGTAGAGAAGCAGCATTTGATCAT
GGTGACTTCTCAATGAGTATGACAAATGTTCTGTGTGTGTTTGATTGTGCCTGCNTGATGTATNTGAGGTTTGTGTAATG
GCTGAGTTAATAAATGAGATGAGACTCGCTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis