Browse Element(s) Details


Os.11914.1.S1_at

Description gb:AK105590.1
DB_XREF= gi:32990799
TID=Os.11914.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11914 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A06, full insert sequence.
FL= gb:AK105590.1 gb:AK072596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1124011/1112-oxophytodienoate reductase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11190Os.27029.1.S1_at11/116+5869108..5875410prolyl oligopeptidase family protein, expressed
LOC_Os06g11200Os.55429.1.S1_at11/116+5877575..587955012-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11210Os.47914.1.S1_at11/116+5883569..588514212-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11220NANA6+5890072..5891184retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g11230OsAffx.15367.1.S1_at9/116+5891689..5893038hypothetical protein
LOC_Os06g11240Os.11914.1.S1_at11/116+5893912..589534912-oxophytodienoate reductase 2, putative, expressed
LOC_Os06g11250OsAffx.27564.1.S1_at11/116+5898564..590037812-oxophytodienoate reductase 1, putative
LOC_Os06g11260NANA6+5904505..590488512-oxophytodienoate reductase 1, putative, expressed
LOC_Os06g11270Os.15852.1.S1_at1/116+5907096..5908469UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11280Os.8778.1.S1_a_at7/116+5911375..591328612-oxophytodienoate reductase 2, putative
LOC_Os06g11290Os.8778.1.S1_a_at11/116+5917119..591867912-oxophytodienoate reductase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11914.1.S1_at--660--7951Chr06:5894422..5894446 (25 bp)
GGATCAGGCTGTCACCGTTCATCGA
LOC_Os06g11240
Os.11914.1.S1_at--340--4031Chr06:5894407..5894431 (25 bp)
CGTTCATCGACTATATGGACTGCGT
LOC_Os06g11240
Os.11914.1.S1_at--1112--8191Chr06:5894280..5894304 (25 bp)
GGAAGGACGCAGGAAGATCACCCAT
LOC_Os06g11240
Os.11914.1.S1_at--821--9911Chr06:5894144..5894168 (25 bp)
TACGGGAGGCACTTCTTGGCCAATC
LOC_Os06g11240
Os.11914.1.S1_at--1000--8111Chr06:5894118..5894142 (25 bp)
GGACTTGCCCAAGAGGTTCGCGATC
LOC_Os06g11240
Os.11914.1.S1_at--259--6711Chr06:5894103..5894127 (25 bp)
GTTCGCGATCAACGCACCATTGAAC
LOC_Os06g11240
Os.11914.1.S1_at--1093--251Chr06:5894071..5894095 (25 bp)
ATAGGTCCACCTTTTACATACAGGA
LOC_Os06g11240
Os.11914.1.S1_at--998--331Chr06:5894054..5894078 (25 bp)
ATACAGGATCCTGTTGTTGGCTACA
LOC_Os06g11240
Os.11914.1.S1_at--159--6631Chr06:5894042..5894066 (25 bp)
GTTGTTGGCTACACGGACTATCCTT
LOC_Os06g11240
Os.11914.1.S1_at--427--4071Chr06:5894001..5894025 (25 bp)
CGAGGGCGCTGCTACTTATGCTTAA
LOC_Os06g11240
Os.11914.1.S1_at--757--6471Chr06:5893919..5893943 (25 bp)
GATACACTCATAAGTGACCCTCACT
LOC_Os06g11240
Target Sequence 
GGATCAGGCTGTCACCGTTCATCGACTATATGGACTGCGTCGACTCCGACCCGGTGGCTCTCGGCTCGTACATGGTGCAG
CAGCTCAACAAGCACCCGGGGTTTCTCTACTGCCACATGGTGGAGCCAAGAATGGCCATCGTGGAAGGACGCAGGAAGAT
CACCCATGGCCTCCTGCCATTCCGGAAGCTGTTCAATGGCACTTTCATCGCTGCCGGAGGATACGATCGGGAGGAAGGAA
ACAAGGTGATAGCCGATGGATATGCTGACCTCGTCGCCTACGGGAGGCACTTCTTGGCCAATCCGGACTTGCCCAAGAGG
TTCGCGATCAACGCACCATTGAACAAGTATAATAGGTCCACCTTTTACATACAGGATCCTGTTGTTGGCTACACGGACTA
TCCTTTCCTTGATGAGAAAGACGAGGGCGCTGCTACTTATGCTTAATCCTCAATTAAATTGTCAAATTGAAATGTTCGGT
TTAGTAATGTGCACTATATTTGTGATACACTCATAAGTGACCCTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis