Browse Element(s) Details


Os.11983.1.S1_at

Description gb:AK073032.1
DB_XREF= gi:32983055
TID=Os.11983.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146H06, full insert sequence.
FL= gb:AK073032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0411011/11LysM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed
LOC_Os03g04150Os.52917.1.S1_at1/113+1878028..1881306transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11983.1.S1_at--78--1971Chr03:1860138..1860162 (25 bp)
ACTGTGCAATGGAACGCTGAAGCTT
LOC_Os03g04110
Os.11983.1.S1_at--6--2571Chr03:1860172..1860196 (25 bp)
AACGGCACCGGTTGCGGATCAACAA
LOC_Os03g04110
Os.11983.1.S1_at--409--2451Chr03:1860192..1860216 (25 bp)
AACAACGTGCGCCTACAGTGGTTAC
LOC_Os03g04110
Os.11983.1.S1_at--522--1091Chr03:1860208..1860232 (25 bp)
AGTGGTTACTCCAACAGTTCATCGC
LOC_Os03g04110
Os.11983.1.S1_at--242--2651Chr03:1860243..1860267 (25 bp)
AACCAGCCTTGCAACTAATCAGACA
LOC_Os03g04110
Os.11983.1.S1_at--513--9351Chr03:1860389..1860413 (25 bp)
TCGCAGTTCGCTAGGTCCATGTGGA
LOC_Os03g04110
Os.11983.1.S1_at--1155--7511Chr03:1860409..1860433 (25 bp)
GTGGAGCATGTCTGTTATCTCCTTC
LOC_Os03g04110
Os.11983.1.S1_at--471--471Chr03:1860425..1860449 (25 bp)
ATCTCCTTCCACATGGTGTTGATCA
LOC_Os03g04110
Os.11983.1.S1_at--967--8051Chr03:1860471..1860495 (25 bp)
GGAGACTACTGCAACTCTAGATGGT
LOC_Os03g04110
Os.11983.1.S1_at--601--5111Chr03:1860629..1860653 (25 bp)
GCACTTGTACGGCTGCTTGAATAAA
LOC_Os03g04110
Os.11983.1.S1_at--706--6871Chr03:1860662..1860686 (25 bp)
GTATTGTATTCGATCTGCATCTGAA
LOC_Os03g04110
Target Sequence 
ACTGTGCAATGGAACGCTGAAGCTTGGTGAGACGAACGGCACCGGTTGCGGATCAACAACGTGCGCCTACAGTGGTTACT
CCAACAGTTCATCGCTCATCATACAAACCAGCCTTGCAACTAATCAGACAACAGCCTGCCAGAGAGGAGGATCTGGGAGG
TCGCAGTTCGCTAGGTCCATGTGGAGCATGTCTGTTATCTCCTTCCACATGGTGTTGATCATTATCTGTTTCCTTTGATG
TTGGAGACTACTGCAACTCTAGATGGTACATTTCAAAGAGTTCTCTACGATCTATGATTGTTGTATACGATATATGATTG
TTGTCGTAACTTAGATTTTGATGACTGGTTTATCCAGCTTTGAAATTTGAGTTTTGACTCTGTTCTTTAGAGGATGAGTG
GCACTTGTACGGCTGCTTGAATAAAACGTCGATGTATTGTATTCGATCTGCATCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis