Browse Element(s) Details


Os.11999.1.S1_at

Description gb:AK067749.1
DB_XREF= gi:32977767
TID=Os.11999.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118J08, full insert sequence.
FL= gb:AK067749.1 gb:AK104935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0201011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11999.1.S1_at--160--10851Chr05:553944..553968 (25 bp)
TTGGGCTATCTGATTGGTTATCCGA
LOC_Os05g02010
Os.11999.1.S1_at--441--7871Chr05:553959..553983 (25 bp)
GGTTATCCGATTTCATCTGCATCTG
LOC_Os05g02010
Os.11999.1.S1_at--965--451Chr05:553973..554121 (25 bp)
ATCTGCATCTGTTGGTGCACTGCAA
LOC_Os05g02010
Os.11999.1.S1_at--773--1011Chr05:554154..554178 (25 bp)
AGGTTCTTGCCCAAATTGCGGTGAG
LOC_Os05g02010
Os.11999.1.S1_at--824--5931Chr05:554275..554296 (22 bp)
GAGCAGGTCTTTGCATTTGTCAAGA
LOC_Os05g02010
Os.11999.1.S1_at--692--3151Chr05:554302..554326 (25 bp)
AATTCCATCAAAGCTCCCCATAGAG
LOC_Os05g02010
Os.11999.1.S1_at--1108--751Chr05:554336..554360 (25 bp)
ATGTCTGCAGCTGCCCACTGGAGTA
LOC_Os05g02010
Os.11999.1.S1_at--565--5711Chr05:554659..554683 (25 bp)
GACTAAATTGCCAGTGCTAGATGCT
LOC_Os05g02010
Os.11999.1.S1_at--430--6791Chr05:554710..554734 (25 bp)
GTTATGTGGCTATTCTGAACTTCTG
LOC_Os05g02010
Os.11999.1.S1_at--578--1351Chr05:554753..554777 (25 bp)
AGAGATGTTGCTCTTACTGCTCCAA
LOC_Os05g02010
Os.11999.1.S1_at--164--2991Chr05:554776..554800 (25 bp)
AATGTGCTTATTTGTTTCTCTGTTC
LOC_Os05g02010
Target Sequence 
TTGGGCTATCTGATTGGTTATCCGATTTCATCTGCATCTGTTGGTGCACTGCAAGGCTTGCTGACAAACAATTTGGTTGC
ACTAAAAGGTTCTTGCCCAAATTGCGGTGAGCAGGTCTTTGCATTTGTCAAGACGGATAATTCCATCAAAGCTCCCCATA
GAGCAGAATGTCATGTCTGCAGCTGCCCACTGGAGTACCGCACTAAAGTTGAGAAATCCTTGTCGGGAACTAGAAGAACA
TGGGTTTATGGCAGAGTTTATCTTGTGAAGCAAGGGCATCCAAGGAAGCGGAAATGGTTGAAAGACTAAATTGCCAGTGC
TAGATGCTGAAGAAAGTTTAGAGGATGATTTTAAGTTATGTGGCTATTCTGAACTTCTGATTGACTGAAACATATTTAGA
GATGTTGCTCTTACTGCTCCAATGTGCTTATTTGTTTCTCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis