Browse Element(s) Details


Os.12061.1.S1_s_at

Description gb:AK121720.1
DB_XREF= gi:37991343
TID=Os.12061.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080B09, full insert sequence.
FL= gb:AK059090.1 gb:AK121720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1265011/1140S ribosomal protein S12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed
LOC_Os07g12620OsAffx.5303.1.S1_at2/117+7212956..7213675hypothetical protein
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed
LOC_Os07g12640Os.18760.1.A1_at10/117+7227470..7230598NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus family protein, expressed
LOC_Os07g12650Os.53151.1.S1_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12650Os.12061.1.S1_s_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12660OsAffx.16230.1.S1_at11/117+7233895..7234296hypothetical protein
LOC_Os07g12670OsAffx.16231.1.S1_at11/117+7237465..7239409hypothetical protein
LOC_Os07g12670Os.57457.1.S1_x_at1/117+7237465..7239409hypothetical protein
LOC_Os07g12680OsAffx.28420.1.S1_at11/117+7242448..7243321LZ-NBS-LRR class RGA, putative
LOC_Os07g12690Os.46012.2.S1_x_at9/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.46012.3.S1_x_at6/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.27088.1.A1_x_at3/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12700NANA7+7254639..7255772expressed protein
LOC_Os07g12710OsAffx.28422.1.S1_at11/117+7256947..7258733GIY-YIG catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12061.1.S1_s_at--486--3671Chr07:7232385..7232409 (25 bp)
CGGTTCTTGGAGAGCCGATGGACCT
LOC_Os07g12650
Os.12061.1.S1_s_at--1082--1371Chr07:7232375..7232399 (25 bp)
AGAGCCGATGGACCTGATGACTGCT
LOC_Os07g12650
Os.12061.1.S1_s_at--235--9731Chr07:7232217..7232241 (25 bp)
TCAAGTTGGTCAAGGCACTCTGCGC
LOC_Os07g12650
Os.12061.1.S1_s_at--642--9151Chr07:7232197..7232221 (25 bp)
TGCGCTGAGCACAATGTTCACCTCG
LOC_Os07g12650
Os.12061.1.S1_s_at--169--1311Chr07:7231695..7231719 (25 bp)
AGAGGGCCTCAACATAGTCCAGGAC
LOC_Os07g12650
Os.12061.1.S1_s_at--340--1151Chr07:7231663..7231687 (25 bp)
AGTCCCACTAGATATAGCGTTCCCG
LOC_Os07g12650
Os.12061.1.S1_s_at--679--9931Chr07:7231649..7231673 (25 bp)
TAGCGTTCCCGATATCCAGAACTTG
LOC_Os07g12650
Os.12061.1.S1_s_at--553--7432Chr07:7231613..7231637 (25 bp)
GTGTACTTTCCTTTATATTTTGCTT
LOC_Os07g12650
Os.12061.1.S1_s_at--1056--10191Chr07:7231598..7231622 (25 bp)
TATTTTGCTTGGTTCTGTGGCTTGC
LOC_Os07g12650
Os.12061.1.S1_s_at--1125--8091Chr07:7231522..7231546 (25 bp)
GGACCTCTGAACTTTATGTTTACTG
LOC_Os07g12650
Os.12061.1.S1_s_at--462--7311Chr07:7231498..7231522 (25 bp)
GTGCTGGATCAGCTGTTTATTTATC
LOC_Os07g12650
Target Sequence 
CGGTTCTTGGAGAGCCGATGGACCTGATGACTGCTCTGCAGCTTGTGATGAAGAAGTCAAGCGCTCATGATGGGCTCGTG
AAGGGGCTCCGTGAGGCGGCCAAGGCCATTGAGAAGCATGCCGCTCAGCTTTGCGTGCTTGCTGAGGACTGTGACCAGCC
TGATTATGTCAAGTTGGTCAAGGCACTCTGCGCTGAGCACAATGTTCACCTCGTTACCGTGCCTAGTGCTAAAACTCTTG
GCGAGTGGGCAGGGCTTTGCAAGATTGATTCTGAGGGCAAGGCGAGGAAGGTCGTAGGCTGCTCCTGCGTCGTTGTCAAG
GACTTCGGTGAAGAGTCAGAGGGCCTCAACATAGTCCAGGACTATGTCAAGTCCCACTAGATATAGCGTTCCCGATATCC
AGAACTTGTGCTTGACATTGTGTACTTTCCTTTATATTTTGCTTGGTTCTGTGGCTTGCTAGGAGATAAGAAAATTTTTG
TGGTGTGAGCCAAGGGGATATGAGCAATTTGGACCTCTGAACTTTATGTTTACTGTGCTGGATCAGCTGTTTATTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12061.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis