Browse Element(s) Details


Os.12068.1.S1_at

Description gb:AK121348.1
DB_XREF= gi:37990971
TID=Os.12068.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.12068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121K11, full insert sequence.
FL= gb:AK059350.1 gb:AK099242.1 gb:AK121348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0339011/11Step II splicing factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03350Os.12048.1.S1_at11/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03350Os.56760.1.S1_at1/118+1555409..1560669lysine and histidine specific transporter, putative, expressed
LOC_Os08g03360Os.11683.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03360OsAffx.16806.1.S1_at11/118+1561209..1566718DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os08g03370Os.53197.1.S1_at10/118+1571881..1573933Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os08g03380Os.11415.1.S1_at11/118+1574605..1578609DnaJ domain containing protein, expressed
LOC_Os08g03390Os.12068.1.S1_at11/118+1578786..1582657Step II splicing factor, putative, expressed
LOC_Os08g03400Os.55681.1.S1_x_at11/118+1582861..1583862expressed protein
LOC_Os08g03410Os.12816.1.S1_at11/118+1590894..1593201Cupin family protein, expressed
LOC_Os08g03420Os.52799.2.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03420Os.52799.1.S1_at11/118+1594506..1598551Kelch motif family protein, expressed
LOC_Os08g03430Os.19307.1.S1_at11/118+1599970..1604750expressed protein
LOC_Os08g03430Os.22819.1.S1_at1/118+1599970..1604750expressed protein
LOC_Os08g03440Os.54327.1.S1_at4/118+1603702..1608193Actin-like protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008284biological_processpositive regulation of cell proliferation
GO:0008380biological_processRNA splicing
GO:0003676molecular_functionnucleic acid binding
GO:0003727molecular_functionsingle-stranded RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12068.1.S1_at--171--3731Chr08:1581518..1581542 (25 bp)
CTACTGCACTGGCTTAGCTGGAATT
LOC_Os08g03390
Os.12068.1.S1_at--608--6211Chr08:1581543..1581567 (25 bp)
GAGGCTGCTGAAGCATCGGCTGATT
LOC_Os08g03390
Os.12068.1.S1_at--991--3091Chr08:1581579..1581603 (25 bp)
AATATGGCCCGCAAGGAAGCTGCAG
LOC_Os08g03390
Os.12068.1.S1_at--333--8991Chr08:1581999..1582023 (25 bp)
TGAAGAAAAGCGACTGGCCACCTGG
LOC_Os08g03390
Os.12068.1.S1_at--888--691Chr08:1582303..1582327 (25 bp)
ATGAGGGATTTCCTCCATTAGGCCT
LOC_Os08g03390
Os.12068.1.S1_at--763--4311Chr08:1582317..1582341 (25 bp)
CCATTAGGCCTTGTATGCTCCATAG
LOC_Os08g03390
Os.12068.1.S1_at--285--10191Chr08:1582349..1582373 (25 bp)
TATATGAGCACAACACTCTGCCTTG
LOC_Os08g03390
Os.12068.1.S1_at--1149--3811Chr08:1582366..1582390 (25 bp)
CTGCCTTGCAGTGTCACTTGTGTAA
LOC_Os08g03390
Os.12068.1.S1_at--1016--9991Chr08:1582396..1582420 (25 bp)
TAGCTGTGGCTATGTCTTCCTCTAA
LOC_Os08g03390
Os.12068.1.S1_at--553--5911Chr08:1582437..1582461 (25 bp)
GAGCTAAGAGCTCTCTACTTCTCTT
LOC_Os08g03390
Os.12068.1.S1_at--777--7431Chr08:1582494..1582518 (25 bp)
GTGTTTGTATTGCTGATCTTTCTAT
LOC_Os08g03390
Target Sequence 
CTACTGCACTGGCTTAGCTGGAATTGAGGCTGCTGAAGCATCGGCTGATTTGATGAAGGCAAATATGGCCCGCAAGGAAG
CTGCAGAAGATGAGCCTGTACGACATGAAGAAAAGCGACTGGCCACCTGGGGAACTGATGTGCCTAATGATATTGTTCTT
GACAAGAAGCTGCTTGATGAAGCCCTAAAGAAGGAGGGTGCGAGGAGGAAAGAGGAGATGGATGAAAGGAAGAGGAAGTA
CAATGTGAAATGGAATGATGAGGTCACCGCGGAAGACATGGAGGCTTACCGCATGAAGAGAATTCACCATGATGATCCTA
TGAGGGATTTCCTCCATTAGGCCTTGTATGCTCCATAGTTGCTCATATATGAGCACAACACTCTGCCTTGCAGTGTCACT
TGTGTAATGTATTAGCTGTGGCTATGTCTTCCTCTAACTGGAGTGATAATTTAGAGCTAAGAGCTCTCTACTTCTCTTCC
AGATGTTACCATCCTCTTGTCCGGATGGTTGTGTTTGTATTGCTGATCTTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis