Browse Element(s) Details


Os.12119.1.S1_at

Description gb:AK068115.1
DB_XREF= gi:32978133
TID=Os.12119.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423B08.25 (P0423B08.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135B08, full insert sequence.
FL= gb:AK068115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6447010/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64420Os.35344.18.S1_x_at10/111+37711711..37716857hypothetical protein
LOC_Os01g64420Os.35344.3.S1_x_at8/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_at7/111+37711711..37716857hypothetical protein
LOC_Os01g64420OsAffx.22940.5.S1_x_at4/111+37711711..37716857hypothetical protein
LOC_Os01g64430Os.7351.1.S1_at11/111+37723064..37724401uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g64440Os.42369.1.S1_s_at11/111+37730057..37730731expressed protein
LOC_Os01g64440OsAffx.2403.1.S1_at11/111+37730057..37730731expressed protein
LOC_Os01g64450Os.36345.1.S1_at10/111+37733111..37734090Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64460OsAffx.23915.1.S1_at10/111+37737511..37738223hypothetical protein
LOC_Os01g64470Os.12119.1.S1_at10/111+37738860..37739860Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64480OsAffx.21715.1.S1_at11/111+37742664..37743329Harpin-induced protein 1 containing protein, expressed
LOC_Os01g64490Os.5832.1.S1_at11/111+37743879..37750198Protein kinase domain containing protein, expressed
LOC_Os01g64500OsAffx.11728.1.S1_at10/111+37752125..37753813hypothetical protein
LOC_Os01g64510NANA1+37756938..37759756Transposable element protein, putative, Transposase_28

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12119.1.S1_at--127--8291Chr01:37739423..37739447 (25 bp)
GGCATCAACTTCAGGAGCGTCGACG
LOC_Os01g64470
Os.12119.1.S1_at--201--7831Chr01:37739368..37739392 (25 bp)
GGTACGCGCCGCTGCAGCCGTTATA
LOC_Os01g64470
Os.12119.1.S1_at--565--3471Chr01:37739220..37739244 (25 bp)
CAGGGTGTACGCTAGACAAGGATTC
LOC_Os01g64470
Os.12119.1.S1_at--102--3391Chr01:37739075..37739099 (25 bp)
CAGCCGAAGTGCGACGTGGACTATT
LOC_Os01g64470
Os.12119.1.S1_at--921--51Chr01:37739053..37739077 (25 bp)
ATTGACGTGTTCGTGTCACTGATAC
LOC_Os01g64470
Os.12119.1.S1_at--586--9651Chr01:37739038..37739062 (25 bp)
TCACTGATACGACATGGAGGCATGA
LOC_Os01g64470
Os.12119.1.S1_at--636--8011Chr01:37739023..37739047 (25 bp)
GGAGGCATGATCGAACTCCTCGGCT
LOC_Os01g64470
Os.12119.1.S1_at--280--2551Chr01:37739010..37739034 (25 bp)
AACTCCTCGGCTGGGAACGACACGA
LOC_Os01g64470
Os.12119.1.S1_at--870--2171Chr01:37738991..37739015 (25 bp)
ACACGACACAGTCTGCCATGCTTTA
LOC_Os01g64470
Os.12119.1.S1_at--170--5211Chr01:37738872..37738896 (25 bp)
GAATTGATCGAGCTAGCCGGGTTTT
LOC_Os01g64470
Os.12119.1.S1_at--336--9971Chr01:37738859..37738883 (25 bp)
TAGCCGGGTTTTTGTGCCGCTATTA
NONE
Target Sequence 
GGCATCAACTTCAGGAGCGTCGACGCGCAGGCGTCCTACGACGGCGACCGGTTCGGGTACGCGCCGCTGCAGCCGTTATA
CNGTTGGTCGGAAGAGCGACGCCAGGTTCGACGTGACGCTGAGCGGCTCGGCGGCCATCGACGACCGCGACGTGGAGCGC
ACATACCGGAGGGAGACGGCGCAGGGGTCTTACGAGGTTAAGGTCAGGGTGTACGCTAGACAAGGATTCAAGGTCAGGGG
CTTCAGGCTGAACAACAAGAGCAAATTCACCTGCACGCTGAACCTGCCGGCGCCCAACTCCGGCAACGGCACCGCGAGCG
GGACGCCGACGACGGTGTTCACGAGGAAGCAGCCGAAGTGCGACGTGGACTATTGACGTGTTCGTGTCACTGATACGACA
TGGAGGCATGATCGAACTCCTCGGCTGGGAACGACACGACACAGTCTGCCATGCTTTATTTAATTTGTTCAGCTTGTAGA
AAATTCTTTCGAAAACATGTATTTGTATATGCACGAATGAATAGATGGAGCTATATGTATTTATGCACGAATGAATTGAT
CGAGCTAGCCGGGTTTTTGTGCCGCTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis