Browse Element(s) Details


Os.12163.1.S1_at

Description gb:U76031.1
DB_XREF= gi:2058501
TID=Os.12163.1
CNT=160
FEA=FLmRNA
TIER=FL+Stack
STK=63
UG=Os.12163 (NCBI UniGene Cluster)
DEF=Oryza sativa hemoglobin 2 mRNA, complete cds.
PROD=hemoglobin 2
FL= gb:U76031.1 gb:AK121522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1251011/11Non-symbiotic hemoglobin 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12480OsAffx.25860.5.S1_at4/113+6576958..6580061hypothetical protein
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12500Os.7678.1.S1_at11/113+6587692..6589708Cytochrome P450 74A2, putative, expressed
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005344molecular_functionoxygen transporter activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12163.1.S1_at--227--3271Chr03:6604976..6605000 (25 bp)
CAACATTGGACTCCGCTTCTTCTTG
LOC_Os03g12510
Os.12163.1.S1_at--823--8051Chr03:6604391..6604528 (25 bp)
GGAGACGCCCACTTTGAGGTGACGA
LOC_Os03g12510
Os.12163.1.S1_at--20--3331Chr03:6604403..6604519 (25 bp)
CACTTTGAGGTGACGAGGTTCGCGC
LOC_Os03g12510
Os.12163.1.S1_at--317--1051Chr03:6604396..6604420 (25 bp)
AGGTGACGAGGTTCGCGCTGCTTGA
LOC_Os03g12510
Os.12163.1.S1_at--455--2211Chr03:6604303..6604327 (25 bp)
ACAACCAACTGGTCGCGGCCATCAA
LOC_Os03g12510
Os.12163.1.S1_at--746--8051Chr03:6604275..6604299 (25 bp)
GGAGATGAAGCCTGCTGAGTGATAT
LOC_Os03g12510
Os.12163.1.S1_at--76--5431Chr03:6604269..6604293 (25 bp)
GAAGCCTGCTGAGTGATATATATAC
LOC_Os03g12510
Os.12163.1.S1_at--469--7411Chr03:6604257..6604281 (25 bp)
GTGATATATATACTGCTCCACCTCC
LOC_Os03g12510
Os.12163.1.S1_at--821--6511Chr03:6604255..6604279 (25 bp)
GATATATATACTGCTCCACCTCCAT
LOC_Os03g12510
Os.12163.1.S1_at--329--10791Chr03:6604212..6604236 (25 bp)
TTGTTGCATTGTGCTCGTTCAATAT
LOC_Os03g12510
Os.12163.1.S1_at--993--31Chr03:6604205..6604229 (25 bp)
ATTGTGCTCGTTCAATATTCCTCGC
LOC_Os03g12510
Target Sequence 
CAACATTGGACTCCGCTTCTTCTTGAAGATCTTCGAGGTCGCGCCGTCGGCGAGCCAGATGTTCTCGTTCCTGCGCAACT
CCGACGTGCCGCTCGAGAAGAACCCCAAGCTCAAGACCCACGCCATGTCCGTCTTCGTCATGACATGTGAGGCCGCCGCG
CAGCTGCGGAAAGCCGGGAAGGTCACCGTGAGAGACACCACCCTGAAGAGGCTCGGCGCCACGCACTTCAAGTACGGCGT
CGGAGACGCCCACTTTGAGGTGACGAGGTTCGCGCTGCTTGAGACGATCAAGGAGGCGGTTCCGGTGGACATGTGGAGCC
CCGCGATGAAGAGCGCGTGGAGCGAAGCCTACAACCAACTGGTCGCGGCCATCAAGCAGGAGATGAAGCCTGCTGAGTGA
TATATATACTGCTCCACCTCCATGATCCTCGCTGATCAACTTTGTTGCATTGTGCTCGTTCAATATTCCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis