Browse Element(s) Details


Os.12216.1.S1_at

Description gb:AK070857.1
DB_XREF= gi:32980880
TID=Os.12216.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066C11, full insert sequence.
FL= gb:AK070857.1 gb:AK059421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5760011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57560Os.10617.1.S1_at11/114+34025190..34029263amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57570Os.28346.5.S1_at11/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.5.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.3.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.4.S1_x_at8/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_x_at5/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_at1/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_at11/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_x_at10/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.4.S1_x_at9/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57610Os.7177.2.S1_a_at10/114+34059415..34066783Auxin response factor 8, putative, expressed
LOC_Os04g57620OsAffx.26646.1.S1_at9/114+34073548..34077199hypothetical protein
LOC_Os04g57620OsAffx.21938.1.S1_at1/114+34073548..34077199hypothetical protein
LOC_Os04g57630Os.49680.1.S1_at11/114+34079714..34083512Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12216.1.S1_at--104--8231Chr04:34054173..34054197 (25 bp)
GGCAATCTTCATCTCATGGTGACAA
LOC_Os04g57600
Os.12216.1.S1_at--242--8031Chr04:34054073..34054097 (25 bp)
GGAGTCCTACTATGAGCCTATCGAA
LOC_Os04g57600
Os.12216.1.S1_at--293--5291Chr04:34054051..34054075 (25 bp)
GAAGGCCAGGACTACAAATCCGATG
LOC_Os04g57600
Os.12216.1.S1_at--61--10391Chr04:34053954..34053978 (25 bp)
TTTTCTCTTGAGCTCTGTGGGCCTT
LOC_Os04g57600
Os.12216.1.S1_at--242--3811Chr04:34053929..34053953 (25 bp)
CTCCTGGTTTTGTTGCATGCAGCAA
LOC_Os04g57600
Os.12216.1.S1_at--129--2451Chr04:34053899..34053923 (25 bp)
AAAATGCTTGCCTTAGTGAATCTAT
LOC_Os04g57600
Os.12216.1.S1_at--457--9851Chr04:34053869..34053893 (25 bp)
TAAATTCCTCTGGTGCTTTGTGTTT
LOC_Os04g57600
Os.12216.1.S1_at--178--6751Chr04:34053834..34053858 (25 bp)
GTTCATAGTGCCAAAGCCTTTATTT
LOC_Os04g57600
Os.12216.1.S1_at--274--7431Chr04:34053736..34053760 (25 bp)
GTGTAAAAACTGCTGCACTCGTTGT
LOC_Os04g57600
Os.12216.1.S1_at--540--5111Chr04:34053722..34053746 (25 bp)
GCACTCGTTGTGTTCAGCATATATC
LOC_Os04g57600
Os.12216.1.S1_at--934--7691Chr04:34053614..34053638 (25 bp)
GGGTAATATAATCAGCCCCATTTTG
LOC_Os04g57600
Target Sequence 
GGCAATCTTCATCTCATGGTGACAAACTTGAGGCTGAAGATATTATTGAGGTGGATCCCGTGGAAAATCAAGATGCTGAT
AATTATGACCAGAGGGAGGGGGAGTCCTACTATGAGCCTATCGAAGGCCAGGACTACAAATCCGATGACGAGAATGCTTA
TGAAGATGATGATGAAGAGTATGATGACGATGATGATTTTGCTCGGAAAGTAGGGGTTGTTTTCTCTTGAGCTCTGTGGG
CCTTCTCCTGGTTTTGTTGCATGCAGCAAAGCTGAAAATGCTTGCCTTAGTGAATCTATTTGGATAAATTCCTCTGGTGC
TTTGTGTTTTGTTCTTGAAGTTCATAGTGCCAAAGCCTTTATTTATAAGGCTGATAACTGATAAGTATAGGTCAGGTATG
AAGCGGGGGTAGGATTCATAAATTAAAAGGGCTTTACGTGTAAAAACTGCTGCACTCGTTGTGTTCAGCATATATCTGAT
CTATCCTGAAACTATTGTATTGTATTAGTTTCCTAACTAACAGACAAGATATTTCTTTGATAAATTTTTTGCCTGATATG
GGTAATATAATCAGCCCCATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis