Browse Element(s) Details


Os.12216.2.S1_a_at

Description gb:AK059618.1
DB_XREF= gi:32969636
TID=Os.12216.2
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G10, full insert sequence.
FL= gb:AK059618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0421011/1133 kDa secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein
LOC_Os08g04210Os.12216.2.S1_a_at11/118+2047854..204948633 kDa secretory protein, putative, expressed
LOC_Os08g04220OsAffx.29024.1.S1_at11/118+2051584..2052410hypothetical protein
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed
LOC_Os08g04240Os.2227.1.S1_at11/118+2056863..205856533 kDa secretory protein, putative, expressed
LOC_Os08g04250Os.8838.2.S1_at11/118+2060053..206143133 kDa secretory protein, putative, expressed
LOC_Os08g04260NANA8+2066196..2066977hypothetical protein
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12216.2.S1_a_at--51--7631Chr08:2048365..2048389 (25 bp)
GGGAAAAGCAACAGCGCAAGCCGTT
LOC_Os08g04210
Os.12216.2.S1_a_at--241--5291Chr08:2048311..2048335 (25 bp)
GAAGGAGCAATACACCCCATTCGTG
LOC_Os08g04210
Os.12216.2.S1_a_at--201--4171Chr08:2048296..2048320 (25 bp)
CCCATTCGTGAGTGTCTACGCATTG
LOC_Os08g04210
Os.12216.2.S1_a_at--673--591Chr08:2048230..2048254 (25 bp)
ATGCCTGTCGGCAGCAGTGTCCAAG
LOC_Os08g04210
Os.12216.2.S1_a_at--552--10691Chr08:2048204..2048228 (25 bp)
TTGATAAGGCCTGTGGTAGCGGACC
LOC_Os08g04210
Os.12216.2.S1_a_at--151--5851Chr08:2048183..2048207 (25 bp)
GACCAGGGTGCCAGATCGACTATAG
LOC_Os08g04210
Os.12216.2.S1_a_at--459--291Chr08:2048162..2048186 (25 bp)
ATAGCAGCTGCTGGGCGCGTTACGA
LOC_Os08g04210
Os.12216.2.S1_a_at--343--4552Chr10:5692689..5692708 (20 bp)
GCGCCACCATCGATATGACCAAATA
NONE
Os.12216.2.S1_a_at--1161--9851Chr08:2048076..2048100 (25 bp)
TACACTAAGGTCACCGTGCATTGAT
LOC_Os08g04210
Os.12216.2.S1_a_at--1026--331Chr08:2048045..2048069 (25 bp)
ATAAGATCATTGTGAGACCTCCTCA
LOC_Os08g04210
Os.12216.2.S1_a_at--540--6371Chr08:2047969..2047993 (25 bp)
GATCCTTAGCATGCTAGCTTCAGCT
LOC_Os08g04210
Target Sequence 
GGGAAAAGCAACAGCGCAAGCCGTTGCNGTGGGCAGCAGCGGGCTAGGTAGGGCGAAGGAGCAATACACCCCATTCGTGA
GTGTCTACGCATTGGCNNNGNNCACACGAGACTTATCGCCGCCGTCGTGCGCGCAATGCCTGTCGGCAGCAGTGTCCAAG
TTTGATAAGGCCTGTGGTAGCGGACCAGGGTGCCAGATCGACTATAGCAGCTGCTGGGCGCGTTACGAGATCTACCCCTT
CTACTTCCCCCTTGCTGCTGCCGGTCGCGCCACCATCGATATGACCAAATACACTAAGGTCACCGTGCATTGATAAGAAT
ATAAGATCATTGTGAGACCTCCTCAAATAAGTACTTGTGTTGACGTTTAATTTCAGTAATATGATAAATTTGTACCGATC
CTTAGCATGCTAGCTTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12216.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis