Browse Element(s) Details


Os.12222.1.S1_a_at

Description gb:AK068314.1
DB_XREF= gi:32978332
TID=Os.12222.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anthocyanidin hydroxylase (OSJNBb0028C01.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151N02, full insert sequence.
FL= gb:AK068314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3788011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37920OsAffx.30707.1.S1_at11/1110+19977688..19979307MATE efflux family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0009821biological_processalkaloid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016491molecular_functionoxidoreductase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12222.1.S1_a_at--956--6751Chr10:19954713..19954737 (25 bp)
GTTCAATGCTTGGAAAGCTGCTGCA
LOC_Os10g37880
Os.12222.1.S1_a_at--528--7891Chr10:19954838..19954862 (25 bp)
GGTTCCCACCTATAAGGAGCGGCGA
LOC_Os10g37880
Os.12222.1.S1_a_at--1067--3671Chr10:19954863..19954887 (25 bp)
CTATTTGGAAGACCGATTGAGGGCT
LOC_Os10g37880
Os.12222.1.S1_a_at--1013--6111Chr10:19954881..19954905 (25 bp)
GAGGGCTAGATACAAATAATCCTAC
LOC_Os10g37880
Os.12222.1.S1_a_at--108--371Chr10:19954896..19954920 (25 bp)
ATAATCCTACGTTGGCTGCGTACAT
LOC_Os10g37880
Os.12222.1.S1_a_at--1058--551Chr10:19954919..19954943 (25 bp)
ATCCATGTTGGATGTAAAGGCCAGG
LOC_Os10g37880
Os.12222.1.S1_a_at--860--1251Chr10:19955003..19955027 (25 bp)
AGATTAGTGAACTTCAGTGAGCAGC
LOC_Os10g37880
Os.12222.1.S1_a_at--109--3471Chr10:19955017..19955041 (25 bp)
CAGTGAGCAGCTATTCCGTTGAGAT
LOC_Os10g37880
Os.12222.1.S1_a_at--97--851Chr10:19955040..19955064 (25 bp)
ATGGACGGAAACATCTTGATCTTAT
LOC_Os10g37880
Os.12222.1.S1_a_at--443--8851Chr10:19955056..19955080 (25 bp)
TGATCTTATATGTAGCCCATCTGCT
LOC_Os10g37880
Os.12222.1.S1_a_at--683--10191Chr10:19955062..19955086 (25 bp)
TATATGTAGCCCATCTGCTGTTGCT
LOC_Os10g37880
Target Sequence 
GTTCAATGCTTGGAAAGCTGCTGCAGTGAGGCATGCCCACCGAGGTTCCCACCTATAAGGAGCGGCGACTATTTGGAAGA
CCGATTGAGGGCTAGATACAAATAATCCTACGTTGGCTGCGTACATCCATGTTGGATGTAAAGGCCAGGTTTTAATCCAT
TTTCTGAAAAACACAAATAATCCTACGTTTTTAAATGTGTAAAGCTTAAGATTAGTGAACTTCAGTGAGCAGCTATTCCG
TTGAGATGGACGGAAACATCTTGATCTTATATGTAGCCCATCTGCTGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12222.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis