Browse Element(s) Details


Os.12264.2.S2_a_at

Description gb:CB620137
DB_XREF= gi:29615124
DB_XREF=OSIIEa05C05.r
CLONE=OSIIEa05C05
TID=Os.12264.2
CNT=180
FEA=FLmRNA
TIER=Stack
STK=17
UG=Os.12264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148J22, full insert sequence
FL= gb:AK103846.1 gb:AK058847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1267011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12660OsAffx.10060.1.S1_at10/113+6716888..6723416Cytochrome P450 family protein, expressed
LOC_Os03g12670Os.12264.2.S1_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.2.S2_a_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.1.S1_a_at3/113+6733602..6736891expressed protein
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed
LOC_Os03g12690OsAffx.25072.1.S1_at11/113+6753963..6754424hypothetical protein
LOC_Os03g12700OsAffx.25073.1.S1_x_at11/113+6755472..6757711expressed protein
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12264.2.S2_a_at--134--51Chr03:6735163..6735187 (25 bp)
ATTGTAGCATTCTCTCGTCGTTTTA
LOC_Os03g12670
Os.12264.2.S2_a_at--345--1211Chr03:6735204..6735228 (25 bp)
AGTTCAACCTGAAGTCACCCGAAGA
LOC_Os03g12670
Os.12264.2.S2_a_at--523--3271Chr03:6735248..6735272 (25 bp)
CAAACTTGGTTGAGGTGGCCGTCTG
LOC_Os03g12670
Os.12264.2.S2_a_at--413--8411Chr03:6735264..6735288 (25 bp)
GGCCGTCTGGGATCTTGACATCTGA
LOC_Os03g12670
Os.12264.2.S2_a_at--1089--731Chr03:6735315..6735339 (25 bp)
ATGTTTTGCTGTGATCACCTGTGCT
LOC_Os03g12670
Os.12264.2.S2_a_at--401--1771Chr03:6735331..6735355 (25 bp)
ACCTGTGCTCATTACATGGTGCTTC
LOC_Os03g12670
Os.12264.2.S2_a_at--320--6631Chr03:6735384..6735408 (25 bp)
GTTGGTGCTCATCAATTTTCATGGT
LOC_Os03g12670
Os.12264.2.S2_a_at--562--4211Chr03:6735419..6735443 (25 bp)
CCGACTTTCCGGTATGCTGGATTAA
LOC_Os03g12670
Os.12264.2.S2_a_at--691--6711Chr03:6735542..6735566 (25 bp)
GTTCTGGATAACAGTTCCGTCTCTG
LOC_Os03g12670
Os.12264.2.S2_a_at--436--6811Chr03:6735580..6735604 (25 bp)
GTTTTCTTGAGGTCAATCCGGAGGT
LOC_Os03g12670
Os.12264.2.S2_a_at--234--5011Chr03:6735634..6735658 (25 bp)
GCATGGCGGCTACATGTTATACCAA
LOC_Os03g12670
Target Sequence 
ATTGTAGCATTCTCTCGTCGTTTTAAGGTGACCTGAAGACAAGTTCAACCTGAAGTCACCCGAAGAAAGGAGTATTCTTG
CGAATCAAACTTGGTTGAGGTGGCCGTCTGGGATCTTGACATCTGAAGCTTGACATCTGAAGCAAGANTGATGATGTTTT
GCTGTGATCACCTGTGCTCATTACATGGTGCTTCNGGAATGACTTGTCTAATGTTGGTAATTGTTGGTGCTCATCAATTT
TCATGGTTATTGTTGGACCGACTTTCCGGTATGCTGGATTAAGCTGTTGCAGCTTTGAAGTCTGGGGTGCCAACCTTGTT
TGGACTAATTGCCAGATGTATCATTATAAATTTCTTCGGTGAGAGTTGAGCACCATGGAGGTTCTGGATAACAGTTCCGT
CTCTGCTGCGGAAGGTTTGTTTTCTTGAGGTCAATCCGGAGGTAAATGGCTGTAATTTGGGTCGTGTAAACAGCATGGCG
GCTACATGTTATACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12264.2.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis