Browse Element(s) Details


Os.12274.1.S1_at

Description gb:AK060475.1
DB_XREF= gi:32970493
TID=Os.12274.1
CNT=51
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.15 (OJ1714_H10.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F03, full insert sequence.
FL= gb:AK059284.1 gb:AK060475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0659010/11ML domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein
LOC_Os07g06590Os.12274.1.S1_at10/117+3197066..3200109ML domain protein, putative, expressed
LOC_Os07g06600Os.18418.1.S1_at11/117+3201368..3202492Glutaredoxin family protein, expressed
LOC_Os07g06610OsAffx.32032.4.S1_s_at11/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06610Os.45946.1.S1_at7/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06620Os.50378.1.S1_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620Os.33534.1.S1_s_at11/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.22476.1.S1_x_at9/117+3219894..3227551YABBY protein, putative, expressed
LOC_Os07g06620OsAffx.28309.1.S1_at7/117+3219894..3227551YABBY protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12274.1.S1_at--1140--9491NONE
TCTCCGCTTCCACTGATAAAACTAT
NONE
Os.12274.1.S1_at--274--6271Chr07:3199488..3199512 (25 bp)
GATGTGAAATACTTCTTCTTCTATG
LOC_Os07g06590
Os.12274.1.S1_at--376--10571Chr07:3199506..3199530 (25 bp)
TTCTATGTCCACTCGGAAACTCGTG
LOC_Os07g06590
Os.12274.1.S1_at--717--2391Chr07:3199522..3199546 (25 bp)
AAACTCGTGAGCTCTGTGATGTGAC
LOC_Os07g06590
Os.12274.1.S1_at--705--8671Chr07:3199536..3199560 (25 bp)
TGTGATGTGACTTCCTGCCCGGCAA
LOC_Os07g06590
Os.12274.1.S1_at--1024--7491Chr07:3199561..3199585 (25 bp)
GTGGTGACTTCTTGGTAGCTCATCA
LOC_Os07g06590
Os.12274.1.S1_at--460--1611Chr07:3199802..3199826 (25 bp)
AGCTGAGCTGCATCTCGTTCGGGTT
LOC_Os07g06590
Os.12274.1.S1_at--974--491Chr07:3199831..3199855 (25 bp)
ATCGGTTTCGCTGCATCAGAAGCCA
LOC_Os07g06590
Os.12274.1.S1_at--275--5431Chr07:3199849..3199873 (25 bp)
GAAGCCACCATCTGAATGCATCCAG
LOC_Os07g06590
Os.12274.1.S1_at--543--611Chr07:3199953..3199977 (25 bp)
ATGCGCATCTGCCAACACATTGTGT
LOC_Os07g06590
Os.12274.1.S1_at--396--3691Chr07:3199982..3200006 (25 bp)
CTAAGACGTTTTATCCAGAGTTGAA
LOC_Os07g06590
Target Sequence 
TCTCCGCTTCCACTGATAAAACTATCGGTAAAGGGAAGCTGGTTATTGATGTGAAATACTTCTTCTTCTATGTCCACTCG
GAAACTCGTGAGCTCTGTGATGTGACTTCCTGCCCGGCAAGTGGTGACTTCTTGGTAGCTCATCAGCAAACCCTGCCATC
ATACACTCCACCAGGCTCTTACACCATCACCATGAAGATGCTGGGTGATAACGATGAGGAGCTGAGCTGCATCTCGTTCG
GGTTCAGCATCGGTTTCGCTGCATCAGAAGCCACCATCTGAATGCATCCAGAGGCAGAATTCAGAAATATCACACCATGG
ATGTAATTACAAAAGCACCTATGTATCTTAGATCATAGAACTCAAATACAATGCGCATCTGCCAACACATTGTGTTCAAC
TAAGACGTTTTATCCAGAGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis