Browse Element(s) Details


Os.12302.1.S1_at

Description gb:AK120837.1
DB_XREF= gi:37990460
TID=Os.12302.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020L02, full insert sequence.
FL= gb:AK120837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4179011/11small nuclear ribonucleoprotein G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41730Os.7400.1.S1_at11/117+25005528..25010886Protein bem46, putative, expressed
LOC_Os07g41740Os.9870.1.S1_at11/117+25011811..25016082PHD finger family protein, putative, expressed
LOC_Os07g41750Os.5498.1.S1_at11/117+25017743..2502001540S ribosomal protein S3-A, putative, expressed
LOC_Os07g41760OsAffx.28863.1.S1_at11/117+25020595..25021008hypothetical protein
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein
LOC_Os07g41820Os.11984.1.S2_at11/117+25047421..25049880expressed protein
LOC_Os07g41820Os.11984.1.S1_at11/117+25047421..25049880expressed protein
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12302.1.S1_at--997--4291Chr07:25037299..25037323 (25 bp)
CCTACTCCGAAGATTTGGCTTTGGT
LOC_Os07g41790
Os.12302.1.S1_at--194--1611Chr07:25035674..25035698 (25 bp)
AGCTGAATGCGAACCGTGTTGTCAT
LOC_Os07g41790
Os.12302.1.S1_at--933--6631Chr07:25035657..25035681 (25 bp)
GTTGTCATTGGCACTCTTCGAGGAT
LOC_Os07g41790
Os.12302.1.S1_at--237--2671Chr07:25035166..25035190 (25 bp)
AAGCCGCAGTGAACTTTCAGCTCGC
LOC_Os07g41790
Os.12302.1.S1_at--84--9331Chr07:25035145..25035169 (25 bp)
TCGCCTAGTTTGCTTCGGTACTTGA
LOC_Os07g41790
Os.12302.1.S1_at--836--7831Chr07:25035109..25035133 (25 bp)
GGTAGTGCCATGTCAAACCTAATTG
LOC_Os07g41790
Os.12302.1.S1_at--873--10411Chr07:25035084..25035108 (25 bp)
TTATTCCAGATGTTTATGCCCGCGG
LOC_Os07g41790
Os.12302.1.S1_at--1017--4651Chr07:25035063..25035087 (25 bp)
GCGGGCATTTTGTATCCTGACCTGG
LOC_Os07g41790
Os.12302.1.S1_at--1093--1571Chr07:25035028..25035052 (25 bp)
AGCTCGTGCACCTTTGTATAGTCTA
LOC_Os07g41790
Os.12302.1.S1_at--574--6771Chr07:25034997..25035021 (25 bp)
GTTACGATTTATGCGCTCTAGCCTG
LOC_Os07g41790
Os.12302.1.S1_at--592--4571Chr07:25034985..25035009 (25 bp)
GCGCTCTAGCCTGAACGTTACTATA
LOC_Os07g41790
Target Sequence 
CCTACTCCGAAGATTTGGCTTTGGTTGAGCGGAGAAGNTCTAGANCTTCCGTNGGGGAGTCGCCATGAGCCGATCGGGGC
AGNCTCCGGATCTGAAGAAGTACATGGACAAGAAGCTCCAAATCAAGCTGAATGCGAACCGTGTTGTCATTGGCACTCTT
CGAGGATTCGATCAGTTTATGAATTTGGTCGTGGACAACACAGTGGAGGTCAATGGAAACGAGAAGAATGACATAGGGAT
GGTGGTTATCNGGGGGAAACAGTGTTGTGATGATTGAAGCCCTCGAACCTGTTCCCAAGCCGCAGTGAACTTTCAGCTCG
CCTAGTTTGCTTCGGTACTTGATTTGGACATTTGGTAGTGCCATGTCAAACCTAATTGTTATTCCAGATGTTTATGCCCG
CGGGCATTTTGTATCCTGACCTGGNTTTATATGCAAGCTCGTGCACCTTTGTATAGTCTAGCCAGCGTTACGATTTATGC
GCTCTAGCCTGAACGTTACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis