Browse Element(s) Details


Os.12314.1.S1_at

Description gb:AK100711.1
DB_XREF= gi:32985920
TID=Os.12314.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.12314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115H14, full insert sequence.
FL= gb:AK060842.1 gb:AK100711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0765011/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07610NANA5+4061788..4062336hypothetical protein
LOC_Os05g07620OsAffx.32109.2.S1_x_at2/115+4069961..4070335hypothetical protein
LOC_Os05g07620OsAffx.32109.3.S1_x_at1/115+4069961..4070335hypothetical protein
LOC_Os05g07626Os.51188.1.S1_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.2.S1_x_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.1.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.3.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07632Os.12102.1.S1_at11/115+4074790..4078739haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os05g07640Os.22560.1.A1_s_at11/115+4080613..4083928expressed protein
LOC_Os05g07640Os.5838.1.S1_at11/115+4080613..4083928expressed protein
LOC_Os05g07650Os.12314.1.S1_at11/115+4085128..4087899Endomembrane protein 70 containing protein, expressed
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12314.1.S1_at--1148--2351Chr05:4085669..4085693 (25 bp)
AAAGCCTTCTTTGCTTCTGGTTCTG
LOC_Os05g07650
Os.12314.1.S1_at--1036--9531Chr05:4085638..4085662 (25 bp)
TCTACGTCTTCCTATACTCAATCAA
LOC_Os05g07650
Os.12314.1.S1_at--840--2011Chr05:4085623..4085647 (25 bp)
ACTCAATCAACTACCTCGTGTTCGA
LOC_Os05g07650
Os.12314.1.S1_at--1078--9391Chr05:4085608..4085632 (25 bp)
TCGTGTTCGACCTTAGGAGCCTAAG
LOC_Os05g07650
Os.12314.1.S1_at--746--9771Chr05:4085587..4085611 (25 bp)
TAAGTGGACCGGTCTCAGCAACGCT
LOC_Os05g07650
Os.12314.1.S1_at--676--9971Chr05:4085561..4085585 (25 bp)
TACCTTGGCTATTCCCTGATCATGG
LOC_Os05g07650
Os.12314.1.S1_at--1134--3551Chr05:4085529..4085553 (25 bp)
CATCATGCTGTCTACTGGTGCTATT
LOC_Os05g07650
Os.12314.1.S1_at--628--4311Chr05:4085478..4085502 (25 bp)
CCATTACCTCTTCTCATCTGTTAAG
LOC_Os05g07650
Os.12314.1.S1_at--404--9771Chr05:4085457..4085481 (25 bp)
TAAGATTGACTAGAGGCACCCACAC
LOC_Os05g07650
Os.12314.1.S1_at--517--3751Chr05:4085433..4085457 (25 bp)
CTCTTGCTGCAATAGGATCACCTGA
LOC_Os05g07650
Os.12314.1.S1_at--727--8271Chr05:4085255..4085279 (25 bp)
GGCATGTCTGCAATGTTTCAGCTAT
LOC_Os05g07650
Target Sequence 
AAAGCCTTCTTTGCTTCTGGTTCTGTCGCCTTCTACGTCTTCCTATACTCAATCAACTACCTCGTGTTCGACCTTAGGAG
CCTAAGTGGACCGGTCTCAGCAACGCTCTACCTTGGCTATTCCCTGATCATGGCCCTTGCCATCATGCTGTCTACTGGTG
CTATTGGCTTCTTGCTGTCCTTCTACTTCGTCCATTACCTCTTCTCATCTGTTAAGATTGACTAGAGGCACCCACACTCT
TGCTGCAATAGGATCACCTGAGCATGGTGATAGTTATCCCTTAGAAACATATCACACAATAATATTGAATTGAAAAGAAA
AATGTAAACATGGCAACGCCCATGGCTTTTGGCCCTGATTAATTCTATCATTTAGCATAGCACAGTTTCTTTAAGTTCAT
GCTTATGTTTTGTAGGCATGTCTGCAATGTTTCAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis