Browse Element(s) Details


Os.12326.1.S1_s_at

Description gb:CA759416
DB_XREF= gi:25803447
DB_XREF=BR060004A20B11.ab1
CLONE=BR060004A20B11.ab1
TID=Os.12326.1
CNT=18
FEA=EST
TIER=Stack
STK=10
UG=Os.12326 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564652.1 (A.thaliana) RSH3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4216011/11RelA/SpoT containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42104Os.56038.1.S1_at11/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.28868.1.S1_at2/117+25193856..25207300expressed protein
LOC_Os07g42104OsAffx.15592.1.A1_at1/117+25193856..25207300expressed protein
LOC_Os07g42130OsAffx.28868.1.S1_at11/117+25209576..25210261hypothetical protein
LOC_Os07g42140Os.50176.1.S1_at11/117+25212849..25214925hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42150OsAffx.28869.1.S1_at11/117+25217814..25221358Transcription initiation factor IID, 31kD subunit family protein
LOC_Os07g42160Os.12326.1.S1_s_at11/117+25224167..25227685RelA/SpoT containing protein, expressed
LOC_Os07g42170Os.4720.1.S1_at11/117+25234988..2523575060S ribosomal protein L27a-2, putative, expressed
LOC_Os07g42180Os.23210.1.S1_at11/117+25238070..25246771PAUSED, putative, expressed
LOC_Os07g42190OsAffx.5606.1.S1_at11/117+25249332..25251771hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12326.1.S1_s_at--988--3131Chr07:25224730..25224754 (25 bp)
AATTCAACTGTACTGGACCTACTGA
LOC_Os07g42160
Os.12326.1.S1_s_at--117--5731Chr07:25224669..25224693 (25 bp)
GACTGAACTGCCATGTCGTGCACAA
LOC_Os07g42160
Os.12326.1.S1_s_at--855--7751Chr07:25224622..25224646 (25 bp)
GGTGACGTGGTCGAACTGATCCCTT
LOC_Os07g42160
Os.12326.1.S1_s_at--510--1971Chr07:25224608..25224632 (25 bp)
ACTGATCCCTTTGGCTCAATGCAAT
LOC_Os07g42160
Os.12326.1.S1_s_at--722--6131Chr07:25224563..25224587 (25 bp)
GAGGGAGTTCCACCAAATGTATGAC
LOC_Os07g42160
Os.12326.1.S1_s_at--458--2991Chr07:25224548..25224572 (25 bp)
AATGTATGACCACCGGCTCACAGTT
LOC_Os07g42160
Os.12326.1.S1_s_at--79--6851Chr07:25224526..25224550 (25 bp)
GTTTCGCAGTCGTGACAACTCTAGG
LOC_Os07g42160
Os.12326.1.S1_s_at--90--10091Chr07:25224436..25224460 (25 bp)
TAGGTTTCCCTTTACTGACAAATAG
LOC_Os07g42160
Os.12326.1.S1_s_at--110--1511Chr07:25224410..25224434 (25 bp)
AGCACTACTCGGGAATCATCTGAAA
LOC_Os07g42160
Os.12326.1.S1_s_at--55--3031Chr07:25224357..25224381 (25 bp)
AATGCGCGCGCGTGTGTGACATATC
LOC_Os07g42160
Os.12326.1.S1_s_at--488--4731Chr07:25224205..25224229 (25 bp)
GCTGTGCAATGTGTGACGTTTCTTC
LOC_Os07g42160
Target Sequence 
AATTCAACTGTACTGGACCTACTGAAGAGGACTTCTAGCTATGACATGCAGTTGAGGTTAAGACTGAACTGCCATGTCGT
GCACAACTTGAACCAAGAGCTTAAAATGGGTGACGTGGTCGAACTGATCCCTTTGGCTCAATGCAATCCTGGAGCTGGAG
GTTATGCGAGGGAGTTCCACCAAATGTATGACCACCGGCTCACAGTTTCGCAGTCGTGACAACTCTAGGATACCAAAAAC
TATGTACATATATATACATGACAGATTGACAGCCCATCAAGATCGTCGGAAGTTTAGGTTTCCCTTTACTGACAAATAGA
AGCACTACTCGGGAATCATCTGAAAAAGATCAAGGNATCGTTTCCCTGTGCCAAATGCGCGCGCGTGTGTGACATATCTT
TTACATTTGTGTTTGTTTATATGTTAACTAAAGAGGAGTAGAGTGTCAATACGTGAAACATTTCTGGAGTTTTAGTCCAA
GAAATGATCCCTGTTTGGGACAGTGTATCATTGTAAGCTTCTATGGCTGTGCAATGTGTGACGTTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12326.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis