Browse Element(s) Details


Os.12352.1.S1_at

Description gb:AK121673.1
DB_XREF= gi:37991296
TID=Os.12352.1
CNT=63
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068C09, full insert sequence.
FL= gb:AK121673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g509709/11seed specific protein Bn15D1B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50930OsAffx.26556.1.S1_at11/114+29926106..29929077POT family protein
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed
LOC_Os04g50980OsAffx.26557.1.S1_at11/114+29958147..29958647hypothetical protein
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12352.1.S1_at--406--9311NONE
TCCCCGAGGAGATTTGTGAGCGCTT
NONE
Os.12352.1.S1_at--410--8051Chr04:29953571..29953595 (25 bp)
GGAGATTTGTGAGCGCTTCAGCCTA
LOC_Os04g50970
Os.12352.1.S1_at--1051--5871Chr04:29953561..29953585 (25 bp)
GAGCGCTTCAGCCTACGACAAGAAC
LOC_Os04g50970
Os.12352.1.S1_at--1131--3991Chr04:29953486..29953510 (25 bp)
CGTCGGGAGCCCTGACAAGTACTGG
LOC_Os04g50970
Os.12352.1.S1_at--983--9271Chr04:29953362..29953386 (25 bp)
TCCGTGCTCGACCAGAAGGTTTGGT
LOC_Os04g50970
Os.12352.1.S1_at--288--6391Chr04:29953298..29953322 (25 bp)
GATCGACAGGCCTAATACGAGCCTT
LOC_Os04g50970
Os.12352.1.S1_at--432--9751Chr04:29953286..29953310 (25 bp)
TAATACGAGCCTTGGCTCTGTGCCA
LOC_Os04g50970
Os.12352.1.S1_at--125--7591Chr04:29953241..29953265 (25 bp)
GGGCTCCTTGATTATTATTACTGTA
LOC_Os04g50970
Os.12352.1.S1_at--405--9731Chr04:29953064..29953088 (25 bp)
TACTATAAGTATTTGGTTACCGGTG
LOC_Os04g50970
Os.12352.1.S1_at--442--6771Chr04:29953049..29953073 (25 bp)
GTTACCGGTGAATCTTTTCTGAGCG
LOC_Os04g50970
Os.12352.1.S1_at--897--9551Chr04:29953037..29953061 (25 bp)
TCTTTTCTGAGCGTGATGGTGCATA
NONE
Target Sequence 
TCCCCGAGGAGATTTGTGAGCGCTTCAGCCTACGACAAGAACGTGGAAGAGCAGGTGCGCCCGGCGGTGGTGCCGGACGA
TGTGATCGGCAGCGTCGGGAGCCCTGACAAGTACTGGGGCCCTCACCCGACCACCGGCGTGTTCGGGCCAGCGGCGGTGG
ACGCCAAGGCGGCGGCGGCCGTTGGCGCGGCGAAGGCCGGCGCGAATGGTGGCGCCTCCGTGCTCGACCAGAAGGTTTGG
TTCCGCCCCCTCGAGGACGTTGAGAAGCCTCCCGTCGCCTGATCGACAGGCCTAATACGAGCCTTGGCTCTGTGCCACCT
ACCATTCTCTTCAGCTGGGGCTCCTTGATTATTATTACTGTACTAGTAGTGTGGTTCTGCTAATATAGTATCAGCAGATC
GACATGGCGTGCATCGGTAGTTACAGTGAGGCGATGCTGATGCCTAAAATAAGAACAAGCAAAAGACGTGTGCTCATGTT
GCTTGTGGCTGTAATGTACTTCTGTCCTAATCCGTACTATAAGTATTTGGTTACCGGTGAATCTTTTCTGAGCGTGATGG
TGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis