Browse Element(s) Details


Os.12354.1.S1_at

Description gb:AU029856
DB_XREF= gi:3763104
DB_XREF=AU029856
CLONE=E50036_2Z
TID=Os.12354.1
CNT=18
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0505D12.24 (P0505D12.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6468011/11BolA-like family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64620Os.30373.1.S1_at11/111+37832004..37832938Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g64630Os.12067.2.S1_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64630Os.12067.1.S1_x_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64640NANA1+37840683..37841376Histone H3, putative, expressed
LOC_Os01g64650Os.10783.2.S1_x_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64650Os.10783.1.S1_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64660Os.3408.1.A2_a_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64660Os.3408.1.A1_x_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64670Os.47717.1.A1_s_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64670Os.3408.2.S1_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64680Os.12354.1.S1_at11/111+37852779..37853582BolA-like family protein, putative, expressed
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12354.1.S1_at--489--2751Chr01:37853519..37853543 (25 bp)
AAGAACACAGATTCGAAGAGGCAGA
LOC_Os01g64680
Os.12354.1.S1_at--554--3351Chr01:37853315..37853336 (22 bp)
CTCGTGGTGACGGATACTTCCGGCG
LOC_Os01g64680
Os.12354.1.S1_at--149--7791Chr01:37853158..37853182 (25 bp)
GGTGCGGCGCGAGCTACGAGATTGA
LOC_Os01g64680
Os.12354.1.S1_at--1101--2731Chr01:37853030..37853054 (25 bp)
AAGAAGGCGCTCACCCCTGCTCAGG
LOC_Os01g64680
Os.12354.1.S1_at--38--6951Chr01:37852958..37852982 (25 bp)
GTAGTTCTTGAACTCACACCTCCAA
LOC_Os01g64680
Os.12354.1.S1_at--255--2032Chr05:24191635..24191752 (25 bp)
ACACCTCCAAACTGTTCGATCACAT
NONE
Os.12354.1.S1_at--20--1971Chr01:37852933..37852957 (25 bp)
ACTGTTCGATCACATATGCACCACG
LOC_Os01g64680
Os.12354.1.S1_at--125--271Chr01:37852920..37852944 (25 bp)
ATATGCACCACGAGTGAACCGATGC
LOC_Os01g64680
Os.12354.1.S1_at--473--4071Chr01:37852910..37852934 (25 bp)
CGAGTGAACCGATGCACTTGGTGTA
LOC_Os01g64680
Os.12354.1.S1_at--346--9511Chr01:37852851..37852875 (25 bp)
TCTCTCTGCTTGAATAATGTGCATA
LOC_Os01g64680
Os.12354.1.S1_at--1116--6471Chr01:37852808..37852832 (25 bp)
GATACTATGCTTGACTGCTTAGAAA
LOC_Os01g64680
Target Sequence 
AAGAACACAGATTCGAAGAGGCAGAGGCGGCGAAGAGACGCGCGANCCATGGGCGTCACCAAGGAGGATGTCGAGGCCGC
CATCACCTCCTCCCTCAGCCCTTCCAGCCTCGTGGTGACGGATACTTCCGGCGGGTGCGGCGCGAGCTACGAGATTGAGG
TGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGCGGCACCGGATGGTGAACACCGCGCTGGCGCCGCACATGGCG
GAGATCCACGCCGTCTCCATCAAGAAGGCGCTCACCCCTGCTCAGGCGCANCCCNAGCCGGAGCCGGCCGCCGATAAGGC
GCCCCAGGCTTNAAGTAGTTCTTGAACTCACACCTCCAAACTGTTCGATCACATATGCACCACGAGTGAACCGATGCACT
TGGTGTAGCGTTTGTCATGGGTGTTTGAGATGTGCGTCAGCTCTCTCTGCTTGAATAATGTGCATACAATGGCAGAATTG
GAATGATACTATGCTTGACTGCTTAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis