Browse Element(s) Details


Os.12067.1.S1_x_at

Description gb:AK068991.1
DB_XREF= gi:32979015
TID=Os.12067.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative actin (P0505D12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170J08, full insert sequence.
FL= gb:AK068991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6463010/11Actin-7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64600NANA1+37817580..37823734retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.2.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.5.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64620Os.30373.1.S1_at11/111+37832004..37832938Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g64630Os.12067.2.S1_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64630Os.12067.1.S1_x_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64640NANA1+37840683..37841376Histone H3, putative, expressed
LOC_Os01g64650Os.10783.2.S1_x_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64650Os.10783.1.S1_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64660Os.3408.1.A2_a_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64660Os.3408.1.A1_x_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64670Os.47717.1.A1_s_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64670Os.3408.2.S1_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64680Os.12354.1.S1_at11/111+37852779..37853582BolA-like family protein, putative, expressed
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12067.1.S1_x_at--449--3211Chr01:37837945..37837967 (23 bp)
CAAGGCCGGTTTTGCTGGTGATGAT
LOC_Os01g64630
Os.12067.1.S1_x_at--427--3471Chr01:37837973..37837997 (25 bp)
CAGGGCTGTCTTTCCTAGCATTGTA
LOC_Os01g64630
Os.12067.1.S1_x_at--859--691Chr01:37838167..37838191 (25 bp)
ATGAGCTCCGTGTGGCTCCTGAAGA
LOC_Os01g64630
Os.12067.1.S1_x_at--660--5931Chr01:37838190..37838214 (25 bp)
GAGCATCCTGTATTGCTGACCGAGG
LOC_Os01g64630
Os.12067.1.S1_x_at--1006--6271NONE
GATGTACGCTGCCATCCAGACAATG
NONE
Os.12067.1.S1_x_at--855--851Chr01:37839878..37839902 (25 bp)
ATGGCATCGCATCAGGGCATTCCTA
LOC_Os01g64630
Os.12067.1.S1_x_at--552--8791Chr01:37839918..37839942 (25 bp)
TGTTGTGTTGGGTTTCACCGGGCAA
LOC_Os01g64630
Os.12067.1.S1_x_at--878--3271Chr01:37839940..37839964 (25 bp)
CAACAAGGATGTTTGCCCGTGCAGT
LOC_Os01g64630
Os.12067.1.S1_x_at--718--10691Chr01:37839952..37839976 (25 bp)
TTGCCCGTGCAGTTTGAAAGCTTTT
LOC_Os01g64630
Os.12067.1.S1_x_at--555--3131Chr01:37839984..37840008 (25 bp)
AATTTTCTACTAGCCGAATTGCGGG
LOC_Os01g64630
Os.12067.1.S1_x_at--151--6991Chr01:37840020..37840044 (25 bp)
GTACCTCTAGTTTTGTTTTCTCTCT
LOC_Os01g64630
Target Sequence 
CAAGGCCGGTTTTGCTGGTGATGATGCACCCAGGGCTGTCTTTCCTAGCATTGTAGGCAGGCCACGCCACACTGGTGTCA
TGGTTGGTATGGGCCAGAAGGATGCCTATGTGGGTGATGAAGCTCAGTCGAAAAGAGGTATACTGACATTGAAATACCCA
ATCGAGCATGGTATTGTCAACAACTGGGATGACATGGAGAAGATATGGCACCACACCTTCTACAATGAGCTCCGTGTGGC
TCCTGAAGAGCATCCTGTATTGCTGACCGAGGCTCCTATGAACCCCAAGGCAAACAGAGAGAAGATGACCCAGATCATGT
TCGAGACCTTCAACTGCCCAGCGATGTACGCTGCCATCCAGACAATGGCATCGCATCAGGGCATTCCTAATGTATGCAAT
GGATTGTTGTGTTGGGTTTCACCGGGCAACAAGGATGTTTGCCCGTGCAGTTTGAAAGCTTTTTGTTTCGAATTTTCTAC
TAGCCGAATTGCGGGTCTTAATGATTGTACCTCTAGTTTTGTTTTCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12067.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis