Browse Element(s) Details


Os.30373.1.S1_at

Description gb:AK108924.1
DB_XREF= gi:32994133
TID=Os.30373.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0505D12.17 (P0505D12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H11, full insert sequence.
FL= gb:AK108924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6462011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64600NANA1+37817580..37823734retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.2.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.5.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64620Os.30373.1.S1_at11/111+37832004..37832938Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g64630Os.12067.2.S1_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64630Os.12067.1.S1_x_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64640NANA1+37840683..37841376Histone H3, putative, expressed
LOC_Os01g64650Os.10783.2.S1_x_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64650Os.10783.1.S1_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64660Os.3408.1.A2_a_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64660Os.3408.1.A1_x_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64670Os.47717.1.A1_s_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64670Os.3408.2.S1_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64680Os.12354.1.S1_at11/111+37852779..37853582BolA-like family protein, putative, expressed
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30373.1.S1_at--115--9691Chr01:37832356..37832380 (25 bp)
TCACGCGGCGCATGTGCTACGGCCA
LOC_Os01g64620
Os.30373.1.S1_at--374--10671Chr01:37832604..37832628 (25 bp)
TTCCACGCGCGGTGCATTGACCGAT
LOC_Os01g64620
Os.30373.1.S1_at--922--10751Chr01:37832620..37832644 (25 bp)
TTGACCGATGGCTCGCCGCGAGGCA
LOC_Os01g64620
Os.30373.1.S1_at--931--7331Chr01:37832691..37832715 (25 bp)
GTGCAGCTGCAGGTTTACCCTGACG
LOC_Os01g64620
Os.30373.1.S1_at--690--1871Chr01:37832731..37832755 (25 bp)
ACGAGACGCCTTAGCACCAACGTGA
LOC_Os01g64620
Os.30373.1.S1_at--736--1491Chr01:37832743..37832767 (25 bp)
AGCACCAACGTGACTCAACTGTACA
LOC_Os01g64620
Os.30373.1.S1_at--689--8731Chr01:37832762..37832786 (25 bp)
TGTACAGTAGGCTATCACAGTAGTT
LOC_Os01g64620
Os.30373.1.S1_at--396--4891Chr01:37832810..37832834 (25 bp)
GCTTTTCTTTTGTCATCCGAGATAC
LOC_Os01g64620
Os.30373.1.S1_at--491--7131Chr01:37832821..37832845 (25 bp)
GTCATCCGAGATACTGTGGTCATTA
LOC_Os01g64620
Os.30373.1.S1_at--1108--1951Chr01:37832833..37832857 (25 bp)
ACTGTGGTCATTATCTCTGTTTTTT
LOC_Os01g64620
Os.30373.1.S1_at--572--651Chr01:37832878..37832902 (25 bp)
ATGTCGAAGTGACCCGGTTCCGATG
LOC_Os01g64620
Target Sequence 
TCACGCGGCGCATGTGCTACGGCCAGGAGCCGCCCGGGGATCACGGCGACGAGGCGGCGGCGGAGCGATGCGCCCGGGTA
GCCAGGAAGAAGCCGGGACGCGCCATCGCGGAGAAGATCCCGGCGATCGTCTGCCCGGCCGGCGGGCTCGATCGGCTCGC
CGGCTGCGGCTCGACGGAGTGCGCCATCTGCCTCTCCGAGTTCGCGCAGGGTCACCGCGTCCGCGTGCTGCCGCGCTGCG
GCCACGGCTTCCACGCGCGGTGCATTGACCGATGGCTCGCCGCGAGGCAGACCTGCCCGACGTGCAGGCGGGAGCCGTTT
GCGGCGGCCGCGGCCGTGCAGCTGCAGGTTTACCCTGACGCCGCCGGCGGCCAGCACGAGACGCCTTAGCACCAACGTGA
CTCAACTGTACAGTAGGCTATCACAGTAGTTGGGAACACAGTGAACATTTTTTTGCTTTTCTTTTGTCATCCGAGATACT
GTGGTCATTATCTCTGTTTTTTTTTTCTTTTCTGTTATGTTCATGTCGAAGTGACCCGGTTCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis