Browse Element(s) Details


Os.3408.1.A2_a_at

Description gb:AB007193.1
DB_XREF= gi:3041774
TID=Os.3408.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3408 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for fructose-1,6-bisphosphatase (cytosolic isoform), complete cds.
PROD=fructose-1,6-bisphosphatase
FL= gb:AK119536.1 gb:AB007193.1 gb:AK070516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6466011/11Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64600NANA1+37817580..37823734retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.2.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.5.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64620Os.30373.1.S1_at11/111+37832004..37832938Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g64630Os.12067.2.S1_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64630Os.12067.1.S1_x_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64640NANA1+37840683..37841376Histone H3, putative, expressed
LOC_Os01g64650Os.10783.2.S1_x_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64650Os.10783.1.S1_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64660Os.3408.1.A2_a_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64660Os.3408.1.A1_x_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64670Os.47717.1.A1_s_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64670Os.3408.2.S1_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64680Os.12354.1.S1_at11/111+37852779..37853582BolA-like family protein, putative, expressed
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005986biological_processsucrose biosynthesis
GO:0006000biological_processfructose metabolism
GO:0016051biological_processcarbohydrate biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0042132molecular_functionfructose-bisphosphatase activity
GO:0042578molecular_functionphosphoric ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3408.1.A2_a_at--776--3471Chr01:37848757..37848781 (25 bp)
CAGGCTGGAGGCCAGTCTTTCACAG
LOC_Os01g64660
Os.3408.1.A2_a_at--531--8011Chr01:37848763..37848787 (25 bp)
GGAGGCCAGTCTTTCACAGGCAAAG
LOC_Os01g64660
Os.3408.1.A2_a_at--255--3311Chr01:37848777..37848919 (25 bp)
CACAGGCAAAGAACGGGCTCTTGAC
LOC_Os01g64660
Os.3408.1.A2_a_at--677--3191Chr01:37848783..37848925 (25 bp)
CAAAGAACGGGCTCTTGACCTCGTT
LOC_Os01g64660
Os.3408.1.A2_a_at--330--8291Chr01:37848910..37848934 (25 bp)
GGCTCTTGACCTCGTTCCTACCAAG
LOC_Os01g64660
Os.3408.1.A2_a_at--264--6691Chr01:37848923..37848947 (25 bp)
GTTCCTACCAAGATTCACGAGAGAT
LOC_Os01g64660
Os.3408.1.A2_a_at--19--3231Chr01:37848931..37848955 (25 bp)
CAAGATTCACGAGAGATCCCCAATA
LOC_Os01g64660
Os.3408.1.A2_a_at--61--3191Chr01:37848951..37848975 (25 bp)
CAATATTTCTTGGAAGCTTCGAAGA
LOC_Os01g64660
Os.3408.1.A2_a_at--311--6051Chr01:37848983..37849007 (25 bp)
GAGATCAAAGGGTTGTACGCTGCAC
LOC_Os01g64660
Os.3408.1.A2_a_at--1113--9691Chr01:37848987..37849011 (25 bp)
TCAAAGGGTTGTACGCTGCACAGGC
LOC_Os01g64660
Os.3408.1.A2_a_at--198--8731Chr01:37849140..37849164 (25 bp)
TGTAATAGTGTTGAGGCCTGGAACA
LOC_Os01g64660
Target Sequence 
CAGGCTGGAGGCCAGTCTTTCACAGGCAAAGAACGGGCTCTTGACCTCGTTCCTACCAAGATTCACGAGAGATCCCCAAT
ATTTCTTGGAAGCTTCGAAGATGTGGAGGAGATCAAAGGGTTGTACGCTGCACAGGCGAAGTAAGCTCGGTTTGATCGAT
CTGGCACCATCAAGGCGTGCGAATGGACTCCCTGGCCTTACTGTAACATGCATGATTCGTCAGGCACTTCTTTTATTCGT
CTTACTGTACGTTTGTAAAATTCAGTGTAATAGTGTTGAGGCCTGGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3408.1.A2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis