Browse Element(s) Details


Os.10783.2.S1_x_at

Description gb:NM_190751.1
DB_XREF= gi:34908585
GEN=P0505D12.21
TID=Os.10783.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10783 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ATGP1 (P0505D12.21), mRNA.
PROD=putative ATGP1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6465011/11VAMP-like protein YKT62, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64600NANA1+37817580..37823734retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.2.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.5.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64620Os.30373.1.S1_at11/111+37832004..37832938Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g64630Os.12067.2.S1_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64630Os.12067.1.S1_x_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64640NANA1+37840683..37841376Histone H3, putative, expressed
LOC_Os01g64650Os.10783.2.S1_x_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64650Os.10783.1.S1_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64660Os.3408.1.A2_a_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64660Os.3408.1.A1_x_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64670Os.47717.1.A1_s_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64670Os.3408.2.S1_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64680Os.12354.1.S1_at11/111+37852779..37853582BolA-like family protein, putative, expressed
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10783.2.S1_x_at--878--1911Chr01:37841891..37841915 (25 bp)
ACGGACGTGAGCCACTTCGGGTTCT
LOC_Os01g64650
Os.10783.2.S1_x_at--803--331Chr01:37842603..37842627 (25 bp)
ATACAAGGTCCACTCACACAACAGG
LOC_Os01g64650
Os.10783.2.S1_x_at--164--3491Chr01:37842624..37842648 (25 bp)
CAGGAATGGTCTTTGCGCAGTTGCA
LOC_Os01g64650
Os.10783.2.S1_x_at--320--2852Chr01:37842675..37842699 (25 bp)
AAGTGCATTTTCTCTTCTGAATAAG
LOC_Os01g64650
Os.10783.2.S1_x_at--100--6331Chr01:37843435..37843459 (25 bp)
GATGCAACAGATGCTGCCCAACAGT
LOC_Os01g64650
Os.10783.2.S1_x_at--735--2491Chr01:37843454..37843478 (25 bp)
AACAGTGGCCTTTCTTGACAGATGC
LOC_Os01g64650
Os.10783.2.S1_x_at--108--971Chr01:37843949..37843973 (25 bp)
AGGACCCTGCAGAGGCTGACAAGTT
LOC_Os01g64650
Os.10783.2.S1_x_at--1019--2411Chr01:37844252..37844276 (25 bp)
AAAACTATTGAGAGTGTGCTCCAAA
LOC_Os01g64650
Os.10783.2.S1_x_at--1065--1371Chr01:37844314..37844335 (22 bp)
AGACCTGAGTGCTGCTTCACAGAAA
LOC_Os01g64650
Os.10783.2.S1_x_at--888--9071Chr01:37844326..37844506 (25 bp)
TGCTTCACAGAAATTGCCAACCATG
LOC_Os01g64650
Os.10783.2.S1_x_at--337--251Chr01:37844548..37844572 (25 bp)
ATATGAATCTGTTGGTTATGGCACA
LOC_Os01g64650
Target Sequence 
ACGGACGTGAGCCACTTCGGGTTCTTCCAGCGGGGCGCCGCGCGGGAGTTCATCGTCTTCGTCGCGCGCACCGTCGCCCA
GCGCACCCAGCCAGGCCAGCGCCAGTCCGTCCAGCACGAAGAATACAAGGTCCACTCACACAACAGGAATGGTCTTTGCG
CAGTTGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGGTACTTGACGAATACCAGAAG
GCTTTCGGGGACTCTTGGAAAGCTGCTACAAAAGATGCAACAGATGCTGCCCAACAGTGGCCTTTCTTGACAGATGCTTT
GACAAAGTTTCAGGACCCTGCAGAGGCTGACAAGTTAATGAAAATCCAGAGGGACTTGGATGAAACAAAAATTATCCTAC
ATAAAACTATTGAGAGTGTGCTCCAAAGAGGGGAAAGATTGGATAGCTTGGTTGAGAAGAGTTCAGACCTGAGTGCTGCT
TCACAGAAATTGCCAACCATGGAAATATTGTATAAGCAAATCCTTGATTATGTAAATAGTATATATGAATCTGTTGGTTA
TGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10783.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis