Browse Element(s) Details


Os.3408.2.S1_at

Description gb:AK111757.1
DB_XREF= gi:37988420
TID=Os.3408.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0505D12.23 (P0505D12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060L20, full insert sequence.
FL= gb:AK111757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6467011/11Soluble inorganic pyrophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64610Os.31312.2.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64610Os.31312.5.S1_x_at5/111+37824367..37827668retrotransposon protein, putative, unclassified
LOC_Os01g64620Os.30373.1.S1_at11/111+37832004..37832938Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g64630Os.12067.2.S1_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64630Os.12067.1.S1_x_at10/111+37836734..37840215Actin-7, putative, expressed
LOC_Os01g64640NANA1+37840683..37841376Histone H3, putative, expressed
LOC_Os01g64650Os.10783.2.S1_x_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64650Os.10783.1.S1_at11/111+37841667..37845446VAMP-like protein YKT62, putative, expressed
LOC_Os01g64660Os.3408.1.A2_a_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64660Os.3408.1.A1_x_at11/111+37846391..37849462Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os01g64670Os.47717.1.A1_s_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64670Os.3408.2.S1_at11/111+37848836..37850889Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g64680Os.12354.1.S1_at11/111+37852779..37853582BolA-like family protein, putative, expressed
LOC_Os01g64690Os.8993.1.S1_at11/111+37854257..37855951U6 snRNA-associated Sm-like protein LSm3, putative, expressed
LOC_Os01g64700Os.18696.1.S1_at10/111+37862801..37866231Tubby protein, putative, expressed
LOC_Os01g64710NANA1+37868950..37869207hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016020cellular_componentmembrane
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3408.2.S1_at--829--6951Chr01:37849357..37849381 (25 bp)
GTAAAATTTTGATACCCGCACCGCA
LOC_Os01g64670
Os.3408.2.S1_at--175--5091Chr01:37849340..37849364 (25 bp)
GCACCGCAGGTACACTTTCTGAAGG
LOC_Os01g64670
Os.3408.2.S1_at--1103--5291Chr01:37849320..37849344 (25 bp)
GAAGGACCGTAAAATATCTACTCAA
LOC_Os01g64670
Os.3408.2.S1_at--1088--4411Chr01:37849265..37849289 (25 bp)
GCCAGGAAGACAGGAAGCACAGGTT
LOC_Os01g64670
Os.3408.2.S1_at--839--5111Chr01:37849249..37849273 (25 bp)
GCACAGGTTTGCCTTAGTGACTTGT
LOC_Os01g64670
Os.3408.2.S1_at--809--3611Chr01:37849229..37849253 (25 bp)
CTTGTTGTATTAGTGCTTTAGCTGC
LOC_Os01g64670
Os.3408.2.S1_at--434--4891Chr01:37849215..37849239 (25 bp)
GCTTTAGCTGCTAGAGATGCACGGT
LOC_Os01g64670
Os.3408.2.S1_at--434--6331Chr01:37849200..37849224 (25 bp)
GATGCACGGTGTATGTATTTTGTAA
LOC_Os01g64670
Os.3408.2.S1_at--40--2311Chr01:37849164..37849188 (25 bp)
AAAGGCCTTAGTTGCTCATGAAGCT
LOC_Os01g64670
Os.3408.2.S1_at--110--9631Chr01:37849149..37849173 (25 bp)
TCATGAAGCTGTTCCAGGCCTCAAC
LOC_Os01g64670
Os.3408.2.S1_at--794--3491Chr01:37849135..37849159 (25 bp)
CAGGCCTCAACACTATTACACTGAA
LOC_Os01g64670
Target Sequence 
GTAAAATTTTGATACCCGCACCGCAGGTACACTTTCTGAAGGACCGTAAAATATCTACTCAAAAGGGGTACCCAAAACTG
AAAAAAAATTTTGCCAGGAAGACAGGAAGCACAGGTTTGCCTTAGTGACTTGTTGTATTAGTGCTTTAGCTGCTAGAGAT
GCACGGTGTATGTATTTTGTAAATAATAGTAGAAAAGGCCTTAGTTGCTCATGAAGCTGTTCCAGGCCTCAACACTATTA
CACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3408.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis