Browse Element(s) Details


Os.12355.1.S1_at

Description gb:AK060396.1
DB_XREF= gi:32970414
TID=Os.12355.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-B03, full insert sequence.
FL= gb:AK060396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g063407/11Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06280Os.35344.18.S1_x_at10/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280Os.35344.3.S1_x_at9/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.5.S1_at8/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.5.S1_x_at6/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.1.S1_s_at2/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06290OsAffx.7013.1.S1_at2/1111+3015454..3018021expressed protein
LOC_Os11g06300NANA11+3019609..3021033expressed protein
LOC_Os11g06310NANA11+3022645..3023268Integral membrane protein
LOC_Os11g06320Os.52744.1.S1_at11/1111+3023618..3027795expressed protein
LOC_Os11g06330OsAffx.18705.1.S1_at10/1111+3031484..3033032hypothetical protein
LOC_Os11g06340Os.12355.1.S1_at7/1111+3033420..3035921Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative, expressed
LOC_Os11g06350OsAffx.30839.1.S1_at11/1111+3036436..3041205hypothetical protein
LOC_Os11g06360OsAffx.18706.1.S1_at1/1111+3051008..3051232hypothetical protein
LOC_Os11g06370Os.49272.1.S1_at11/1111+3059426..3061940expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006122biological_processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750cellular_componentrespiratory chain complex III (sensu Eukaryota)
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12355.1.S1_at--163--9091Chr11:3033419..3033443 (25 bp)
TGCTACCATCGGAGTCAGATCCATT
NONE
Os.12355.1.S1_at--38--1471Chr11:3034641..3034665 (25 bp)
AGAAGTACCTTGAGGAGCGCTGCAA
LOC_Os11g06340
Os.12355.1.S1_at--564--7291Chr11:3034672..3034696 (25 bp)
GTGCGTAAAGCCACTCTATGAGTAT
LOC_Os11g06340
Os.12355.1.S1_at--982--6471Chr11:3035543..3035567 (25 bp)
GATACTGGGCATAAACACTGCACTG
LOC_Os11g06340
Os.12355.1.S1_at--273--3851Chr11:3035560..3035584 (25 bp)
CTGCACTGGGCAATATTTCGACTAT
LOC_Os11g06340
Os.12355.1.S1_at--233--8671Chr11:3035726..3035747 (22 bp)
TGTGTAGCACCGAAACTCCTTGAGA
LOC_Os11g06340
Os.12355.1.S1_at--890--5671Chr11:3035785..3035809 (25 bp)
GACTTGTTCTATTTGCGTAACCTTG
LOC_Os11g06340
Os.12355.1.S1_at--920--3071Chr11:3035873..3035897 (25 bp)
AATAAAAGCCACCATTTCCCATATC
LOC_Os11g06340
Os.12355.1.S1_at--880--4991Chr11:3035901..3035925 (25 bp)
GCATGTGGATTTATTCGGTCTGAGC
NONE
Os.12355.1.S1_at--586--8551Chr11:3035936..3035960 (25 bp)
TGGATCGTCATTTCTGTTTTGGCAT
NONE
Os.12355.1.S1_at--1154--10231Chr11:3035953..3035977 (25 bp)
TTTGGCATGTAATCGACCAGCATCG
NONE
Target Sequence 
TGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCG
GATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGT
AAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAAT
ATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACT
TTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTG
TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGA
CATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis