Browse Element(s) Details


OsAffx.30839.1.S1_at

Description tigr:9639.m00559
TID=OsAffx.30839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0635011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06280Os.35344.18.S1_x_at10/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280Os.35344.3.S1_x_at9/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.5.S1_at8/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.5.S1_x_at6/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.1.S1_s_at2/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06290OsAffx.7013.1.S1_at2/1111+3015454..3018021expressed protein
LOC_Os11g06300NANA11+3019609..3021033expressed protein
LOC_Os11g06310NANA11+3022645..3023268Integral membrane protein
LOC_Os11g06320Os.52744.1.S1_at11/1111+3023618..3027795expressed protein
LOC_Os11g06330OsAffx.18705.1.S1_at10/1111+3031484..3033032hypothetical protein
LOC_Os11g06340Os.12355.1.S1_at7/1111+3033420..3035921Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative, expressed
LOC_Os11g06350OsAffx.30839.1.S1_at11/1111+3036436..3041205hypothetical protein
LOC_Os11g06360OsAffx.18706.1.S1_at1/1111+3051008..3051232hypothetical protein
LOC_Os11g06370Os.49272.1.S1_at11/1111+3059426..3061940expressed protein
LOC_Os11g06380Os.14919.1.S1_at5/1111+3062726..3067659transposon protein, putative, Mutator sub-class
LOC_Os11g06380OsAffx.29313.1.S1_at1/1111+3062726..3067659transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30839.1.S1_at--1146--8591Chr11:3037617..3037641 (25 bp)
TGGTGCCCACAGAAGATAACGTCGT
LOC_Os11g06350
OsAffx.30839.1.S1_at--344--351Chr11:3037602..3037626 (25 bp)
ATAACGTCGTGATCCCAAGAGCATT
LOC_Os11g06350
OsAffx.30839.1.S1_at--6--4791Chr11:3037576..3037600 (25 bp)
GCTGCCATAGGTTGTCTGATCCAAT
LOC_Os11g06350
OsAffx.30839.1.S1_at--919--4831Chr11:3037547..3037571 (25 bp)
GCTAATGTTGAGTTCGCCTATCGGC
LOC_Os11g06350
OsAffx.30839.1.S1_at--665--10811Chr11:3037384..3037408 (25 bp)
TTGTCGGCAGCTCTGATCAGGCTAA
LOC_Os11g06350
OsAffx.30839.1.S1_at--888--9731Chr11:3037362..3037386 (25 bp)
TAATCACGCTATCATTCGACTGCTG
LOC_Os11g06350
OsAffx.30839.1.S1_at--7--5731Chr11:3037345..3037369 (25 bp)
GACTGCTGGCTTTTCACTGTAAGAG
LOC_Os11g06350
OsAffx.30839.1.S1_at--37--6491Chr11:3037320..3037344 (25 bp)
GATACTGGAGCTCGCCACTGAAGAA
LOC_Os11g06350
OsAffx.30839.1.S1_at--965--8591Chr11:3036698..3036722 (25 bp)
TGGTCTGTCGTTACATAGGCCCCAA
LOC_Os11g06350
OsAffx.30839.1.S1_at--664--8191Chr11:3036584..3036608 (25 bp)
GGAAGACCGACAACTGGACTCCATT
LOC_Os11g06350
OsAffx.30839.1.S1_at--319--1351Chr11:3036533..3036557 (25 bp)
AGAGTTTCTGTACTGGCTGTTGCGC
LOC_Os11g06350
Target Sequence 
TGGTGCCCACAGAAGATAACGTCGTGATCCCAAGAGCATTTGCTGCCATAGGTTGTCTGATCCAATTTGTGCTAATGTTG
AGTTCGCCTATCGGCCGTTGGTTGGACAACAATTTTAATGATGATGAGCCTACCACCCGCAAGATCAAGTTGTCGGCAGC
TCTGATCAGGCTAATCACGCTATCATTCGACTGCTGGCTTTTCACTGTAAGAGGATACTGGAGCTCGCCACTGAAGAAGC
CATTGGCGGAAATGACAGCAACCAACTTGGTCTTTACCAGCATTGTGGTGGTCTGTCGTTACATAGGCCCCAACAAGCTC
AGGAACTTTTGTGTTGATATTTGGAATTGGCTTCGGGCTGTCCCGGAAAAGCTTCAAGGCAAGTGGAATAGCTTCATACA
GTGGAAGACCGACAACTGGACTCCATTCACGAATACAGTGAAGGTAGCATTACAGAGTTTCTGTACTGGCTGTTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis