Browse Element(s) Details


Os.49272.1.S1_at

Description gb:AK107274.1
DB_XREF= gi:32992483
TID=Os.49272.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A03, full insert sequence.
FL= gb:AK107274.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0637011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06340Os.12355.1.S1_at7/1111+3033420..3035921Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative, expressed
LOC_Os11g06350OsAffx.30839.1.S1_at11/1111+3036436..3041205hypothetical protein
LOC_Os11g06360OsAffx.18706.1.S1_at1/1111+3051008..3051232hypothetical protein
LOC_Os11g06370Os.49272.1.S1_at11/1111+3059426..3061940expressed protein
LOC_Os11g06380Os.14919.1.S1_at5/1111+3062726..3067659transposon protein, putative, Mutator sub-class
LOC_Os11g06380OsAffx.29313.1.S1_at1/1111+3062726..3067659transposon protein, putative, Mutator sub-class
LOC_Os11g06390Os.9627.1.S1_at11/1111+3074781..3078111Actin-7, putative, expressed
LOC_Os11g06400OsAffx.27522.1.S1_x_at7/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.16187.1.S1_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified
LOC_Os11g06400OsAffx.3613.1.S1_x_at1/1111+3077964..3085886retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49272.1.S1_at--268--10791Chr11:3060974..3060998 (25 bp)
TTGTTTCCCTTACTCAGTTGGAAGG
LOC_Os11g06370
Os.49272.1.S1_at--16--7591Chr11:3060950..3060974 (25 bp)
GGGCTCTGGTCTGTTACAACACTCT
LOC_Os11g06370
Os.49272.1.S1_at--1004--2191Chr11:3060935..3060959 (25 bp)
ACAACACTCTGTTCTGCAAGATGCC
LOC_Os11g06370
Os.49272.1.S1_at--32--3611Chr11:3060873..3060897 (25 bp)
CTTGGCGTACCTGTGAGTGGTGCTA
LOC_Os11g06370
Os.49272.1.S1_at--237--10251Chr11:3060833..3060857 (25 bp)
TTTGGATTGGCACTATGGCTCTGGC
LOC_Os11g06370
Os.49272.1.S1_at--531--4811Chr11:3060816..3060840 (25 bp)
GCTCTGGCTGGATTCTTTGGATACT
LOC_Os11g06370
Os.49272.1.S1_at--234--10231Chr11:3060801..3060825 (25 bp)
TTTGGATACTGTCTCGCGGTTCACG
LOC_Os11g06370
Os.49272.1.S1_at--422--2151Chr11:3059755..3059779 (25 bp)
ACACCAGCTTAGAGATTTGCGGGAG
LOC_Os11g06370
Os.49272.1.S1_at--996--8911Chr11:3059724..3059748 (25 bp)
TGACCGTTTTGAGAAGCCAGGCTTT
LOC_Os11g06370
Os.49272.1.S1_at--862--6411Chr11:3059650..3059674 (25 bp)
GATCTCATTCTCTAGGTGTTTGGTT
LOC_Os11g06370
Os.49272.1.S1_at--630--2611Chr11:3059604..3059628 (25 bp)
AACGCCAATGCCTATTGTGTGTAGT
LOC_Os11g06370
Target Sequence 
TTGTTTCCCTTACTCAGTTGGAAGGGGCTCTGGTCTGTTACAACACTCTGTTCTGCAAGATGCCAATTTGTTTTGGTGCA
TGGTTCGTTCTTGGCGTGCTTCTTGGCGTACCTGTGAGTGGTGCTATTGAGATGCTAATCTTTTGGATTGGCACTATGGC
TCTGGCTGGATTCTTTGGATACTGTCTCGCGGTTCACGCATATTGCAAAAGGAATCAGAAGACACCAGCTTAGAGATTTG
CGGGAGCTTTNATGACCGTTTTGAGAAGCCAGGCTTTACTCNTTGTTGCTCTTAGAGACCNAAGAGCGATTTNAAAGTAN
GATCAAGATCTCATTCTCTAGGTGTTTGGTTGAGTGCTCTTANAGGCAGANTAACGCCAATGCCTATTGTGTGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis