Browse Element(s) Details


OsAffx.7013.1.S1_at

Description tigr:9639.m00551
TID=OsAffx.7013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g062902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06259OsAffx.22947.1.S1_x_at11/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06259OsAffx.22947.3.S1_x_at5/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06259OsAffx.22947.2.S1_x_at3/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06259OsAffx.22947.5.S1_x_at3/1111+2990007..2994584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.1.S1_x_at9/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.3.S1_x_at5/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.2.S1_x_at3/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06268OsAffx.22947.5.S1_x_at3/1111+2998527..3003104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280Os.35344.18.S1_x_at10/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280Os.35344.3.S1_x_at9/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.5.S1_at8/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.5.S1_x_at6/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06280OsAffx.22940.1.S1_s_at2/1111+3006068..3012710retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06290OsAffx.7013.1.S1_at2/1111+3015454..3018021expressed protein
LOC_Os11g06300NANA11+3019609..3021033expressed protein
LOC_Os11g06310NANA11+3022645..3023268Integral membrane protein
LOC_Os11g06320Os.52744.1.S1_at11/1111+3023618..3027795expressed protein
LOC_Os11g06330OsAffx.18705.1.S1_at10/1111+3031484..3033032hypothetical protein
LOC_Os11g06340Os.12355.1.S1_at7/1111+3033420..3035921Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative, expressed
LOC_Os11g06350OsAffx.30839.1.S1_at11/1111+3036436..3041205hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7013.1.S1_at--601--831Chr11:2980130..2980154 (25 bp)
ATGGATCGTTTCTTGGTGCAATTTT
NONE
OsAffx.7013.1.S1_at--744--6391Chr11:2980133..2980157 (25 bp)
GATCGTTTCTTGGTGCAATTTTATA
NONE
OsAffx.7013.1.S1_at--638--4031Chr11:2980136..2980160 (25 bp)
CGTTTCTTGGTGCAATTTTATATGG
NONE
OsAffx.7013.1.S1_at--797--3611Chr11:2980141..2980165 (25 bp)
CTTGGTGCAATTTTATATGGTGAAC
NONE
OsAffx.7013.1.S1_at--451--7771Chr11:2980144..2980168 (25 bp)
GGTGCAATTTTATATGGTGAACTAT
NONE
OsAffx.7013.1.S1_at--713--3871Chr11:2980289..2980313 (25 bp)
CTGTTGATATGAGCAGGCTAGCTGT
NONE
OsAffx.7013.1.S1_at--919--10771Chr11:2980292..2980316 (25 bp)
TTGATATGAGCAGGCTAGCTGTTGT
NONE
OsAffx.7013.1.S1_at--1089--10491Chr11:2980328..2980352 (25 bp)
TTCAATGTTGCCTGGTTTATGATCT
NONE
OsAffx.7013.1.S1_at--985--3192Chr11:2980330..2980354 (25 bp)
CAATGTTGCCTGGTTTATGATCTTA
NONE
OsAffx.7013.1.S1_at--652--732Chr11:2980332..2980356 (25 bp)
ATGTTGCCTGGTTTATGATCTTAGG
NONE
OsAffx.7013.1.S1_at--504--4471Chr11:2980337..2980361 (25 bp)
GCCTGGTTTATGATCTTAGGGTGGC
NONE
Target Sequence 
ATGGATCGTTTCTTGGTGCAATTTTATATGGTGAACTATTAAGAGCTAATCCTAACACTCAATTCTGGAATAGAATCTTA
TTATTCTTAAGAGAGCTGGCACGGAAGCAATTGACTTCCTCTGGTCTACACCCTGAGGATCTTTTCGAAAGAAATATCCC
TGTTGATATGAGCAGGCTAGCTGTTGTGGATGGTCAAGTTCAATGTTGCCTGGTTTATGATCTTAGGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis