Browse Element(s) Details


Os.12448.1.S1_at

Description gb:AK069464.1
DB_XREF= gi:32979488
TID=Os.12448.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022A11, full insert sequence.
FL= gb:AK069464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0687010/11MIZ zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06830NANA6+3221905..3227837retrotransposon protein, putative, unclassified
LOC_Os06g06840Os.31312.2.S1_x_at3/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06840Os.31312.5.S1_x_at2/116+3228465..3231713transposon protein, putative, unclassified
LOC_Os06g06850Os.54240.1.S1_at2/116+3234340..3238083NB-ARC domain containing protein
LOC_Os06g06860Os.54240.1.S1_at11/116+3240834..3245313NB-ARC domain containing protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_s_at11/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.12448.1.S1_at10/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_at9/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.56258.1.S1_at1/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06880Os.19570.1.S1_at11/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880Os.50260.2.A1_x_at1/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890OsAffx.15292.1.S1_at11/116+3269078..3269750hypothetical protein
LOC_Os06g06890OsAffx.26473.1.S1_at1/116+3269078..3269750hypothetical protein
LOC_Os06g06900OsAffx.27480.1.S1_at11/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06900Os.23257.1.A1_at1/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12448.1.S1_at--5--10871Chr06:3249913..3249937 (25 bp)
TTGGACGCTACAACCCCAGTGTGAA
LOC_Os06g06870
Os.12448.1.S1_at--731--751Chr06:3249865..3249889 (25 bp)
ATGTGACAAGTCAGGCTCGGCCAGC
LOC_Os06g06870
Os.12448.1.S1_at--821--7531Chr06:3249772..3249796 (25 bp)
GTGGCTCTGAACTCTGAATCTGCTA
LOC_Os06g06870
Os.12448.1.S1_at--893--451Chr06:3249738..3249762 (25 bp)
ATCTCTCTCCCTAGCTATGTTAGAT
LOC_Os06g06870
Os.12448.1.S1_at--488--7751Chr06:3249667..3249691 (25 bp)
GGTGCTAACGCGCTAAACTGACTTG
LOC_Os06g06870
Os.12448.1.S1_at--421--5691Chr06:3249648..3249672 (25 bp)
GACTTGCAATGCTGGAACACCGTTT
LOC_Os06g06870
Os.12448.1.S1_at--651--2471Chr06:3249633..3249657 (25 bp)
AACACCGTTTTGTAGCAGTTCCTGT
LOC_Os06g06870
Os.12448.1.S1_at--636--4271Chr06:3249613..3249637 (25 bp)
CCTGTGCTGCTCAACTTACAAGTTA
LOC_Os06g06870
Os.12448.1.S1_at--713--2811Chr06:3249594..3249618 (25 bp)
AAGTTAGTTATACAACCCGCGCTGC
LOC_Os06g06870
Os.12448.1.S1_at--218--10431Chr06:3249552..3249576 (25 bp)
TTATGTTGTGTATTGCGGCTATCTT
LOC_Os06g06870
Os.12448.1.S1_at--393--431Chr06:3249505..3249529 (25 bp)
ATCATTTCTGTGCTGGATTCTGCCA
NONE
Target Sequence 
TTGGACGCTACAACCCCAGTGTGAACATTGCTGGTCAGCAGACAAGTCATGTGACAAGTCAGGCTCGGCCAGCTGGTCCG
GATGCGCGCAGGTAATGGTAAGTCAGATAACTATGCATTGCTCATCAAGAAGATTTTGTTGGTGGCTCTGAACTCTGAAT
CTGCTAAGATAGATGATCTCTCTCCCTAGCTATGTTAGATTGTCGTTAATCTGTTTAGCTTTAGGAGGTTGCGAGAGCCT
AGTGAGGGTGCTAACGCGCTAAACTGACTTGCAATGCTGGAACACCGTTTTGTAGCAGTTCCTGTGCTGCTCAACTTACA
AGTTAGTTATACAACCCGCGCTGCATATGTACAAAGCCTTATTATGTTGTGTATTGCGGCTATCTTATTATACTCTTTGT
GTTATTTGATCATTTCTGTGCTGGATTCTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis