Browse Element(s) Details


Os.12528.1.S1_x_at

Description gb:AK065739.1
DB_XREF= gi:32975757
TID=Os.12528.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12528 (NCBI UniGene Cluster)
UG_TITLE=Subsp. indica mRNA for cytosolic pyruvate orthophosphate dikinase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039L05, full insert sequence.
FL= gb:AK065739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3175011/11Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31730Os.14955.1.S1_at11/113+18085708..18098199expressed protein
LOC_Os03g31730Os.26358.2.S1_at1/113+18085708..18098199expressed protein
LOC_Os03g31740NANA3+18102958..18103695hypothetical protein
LOC_Os03g31750Os.12528.1.S1_x_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31750OsAffx.13147.1.S1_s_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31760OsAffx.22964.1.S1_at11/113+18121362..18126203expressed protein
LOC_Os03g31760Os.10698.1.S1_s_at11/113+18121362..18126203expressed protein
LOC_Os03g31770NANA3+18130048..18130290retrotransposon protein, putative, unclassified
LOC_Os03g31780OsAffx.13147.1.S1_s_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31780OsAffx.13147.1.S1_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31790OsAffx.13148.1.S1_at11/113+18138132..18138422hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016310biological_processphosphorylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12528.1.S1_x_at--29--6851Chr03:18109075..18109099 (25 bp)
GTTTCTGCCAACCTACTTGTCAAAG
LOC_Os03g31750
Os.12528.1.S1_x_at--971--5251Chr03:18108861..18109063 (25 bp)
GAATGACCCCTTCGAGGTGTTTGAC
LOC_Os03g31750
Os.12528.1.S1_x_at--1108--7611Chr03:18108605..18108629 (25 bp)
GGGAACATGGTGGTGAGCCTTCTTC
LOC_Os03g31750
Os.12528.1.S1_x_at--470--5871Chr03:18108591..18108615 (25 bp)
GAGCCTTCTTCAGTTGCATTTTTCG
LOC_Os03g31750
Os.12528.1.S1_x_at--879--4931Chr03:18108576..18108600 (25 bp)
GCATTTTTCGCGAAGGTTGGGCTGA
LOC_Os03g31750
Os.12528.1.S1_x_at--113--10851Chr03:18108560..18108584 (25 bp)
TTGGGCTGAACTACGTTTCTTGCTC
LOC_Os03g31750
Os.12528.1.S1_x_at--338--131Chr03:18108396..18108420 (25 bp)
ATTCAGGGTTCCAATTGCAAGGCTA
LOC_Os03g31750
Os.12528.1.S1_x_at--1081--2351Chr03:18108327..18108351 (25 bp)
AAACCGTTGGTGCATCTTGTAAATA
LOC_Os03g31750
Os.12528.1.S1_x_at--194--9951Chr03:18108268..18108292 (25 bp)
TACGATGGACACTCGCAACATGCTT
LOC_Os03g31750
Os.12528.1.S1_x_at--496--231Chr03:18108189..18108213 (25 bp)
ATATTTTTTGTTTGTGTGCCCACGG
LOC_Os03g31750
Os.12528.1.S1_x_at--1046--9151Chr03:18108173..18108197 (25 bp)
TGCCCACGGTAATTGCTGCCATAAA
LOC_Os03g31750
Target Sequence 
GTTTCTGCCAACCTACTTGTCAAAGGGTATCCTCCAGAATGACCCCTTCGAGGTGTTTGACCAGAAGGGAGTGGGGGAGC
TTGTTAAGGTTGCCGTAGAGCGGGGCCGGAAGGCAAGGCCTGATTTAGAGGTGGGCATTTGTGGGGAACATGGTGGTGAG
CCTTCTTCAGTTGCATTTTTCGCGAAGGTTGGGCTGAACTACGTTTCTTGCTCCCCATTCAGGGTTCCAATTGCAAGGCT
AGCAGCAGCGCAGGTGATGCTGTGATCGGCGAGTACTAATGAAGCAAACCGTTGGTGCATCTTGTAAATATACGAAGAGT
AAATAATGCTTAAATAATTTATGTTACGATGGACACTCGCAACATGCTTTGCTTGACGAAATGTATGATGACCTGCAAAT
GGAGGTTTGCATGTGTATAAATAATATTTTTTGTTTGTGTGCCCACGGTAATTGCTGCCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12528.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis