Browse Element(s) Details


Os.10698.1.S1_s_at

Description gb:AU078732
DB_XREF= gi:6012915
DB_XREF=AU078732
CLONE=S2274_6Z
TID=Os.10698.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.10698 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_195483.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3176011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31730Os.14955.1.S1_at11/113+18085708..18098199expressed protein
LOC_Os03g31730Os.26358.2.S1_at1/113+18085708..18098199expressed protein
LOC_Os03g31740NANA3+18102958..18103695hypothetical protein
LOC_Os03g31750Os.12528.1.S1_x_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31750OsAffx.13147.1.S1_s_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31760OsAffx.22964.1.S1_at11/113+18121362..18126203expressed protein
LOC_Os03g31760Os.10698.1.S1_s_at11/113+18121362..18126203expressed protein
LOC_Os03g31770NANA3+18130048..18130290retrotransposon protein, putative, unclassified
LOC_Os03g31780OsAffx.13147.1.S1_s_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31780OsAffx.13147.1.S1_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31790OsAffx.13148.1.S1_at11/113+18138132..18138422hypothetical protein
LOC_Os03g31800OsAffx.29316.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800OsAffx.6261.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.27691.2.S1_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.7329.1.S1_s_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31810OsAffx.25330.1.S1_at9/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.16709.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.8676.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.23566.1.S1_at1/113+18151103..18152794hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10698.1.S1_s_at--912--7271Chr03:18122165..18122189 (25 bp)
GTCCACAACGAGACCATCTTCCAGA
LOC_Os03g31760
Os.10698.1.S1_s_at--1013--5971Chr03:18122156..18122180 (25 bp)
GAGACCATCTTCCAGACGTAATTAA
LOC_Os03g31760
Os.10698.1.S1_s_at--403--1892Chr10:15317185..15317337 (25 bp)
ACGTAATTAAGCACTCGATCGATCA
NONE
Os.10698.1.S1_s_at--323--9391Chr03:18122127..18122151 (25 bp)
TCGATCGATCAAAAGCACGTATATT
LOC_Os03g31760
Os.10698.1.S1_s_at--135--5091Chr03:18122113..18122137 (25 bp)
GCACGTATATTAGCTAAAGACGATA
LOC_Os03g31760
Os.10698.1.S1_s_at--757--4831Chr03:18122101..18122125 (25 bp)
GCTAAAGACGATACTCTACCAGTAG
LOC_Os03g31760
Os.10698.1.S1_s_at--286--6751Chr03:18122080..18122104 (25 bp)
GTAGAGAAACTATCTTTTATCGGTC
LOC_Os03g31760
Os.10698.1.S1_s_at--733--2031Chr03:18122072..18122096 (25 bp)
ACTATCTTTTATCGGTCGACCAAAT
LOC_Os03g31760
Os.10698.1.S1_s_at--637--9353Chr12:6433525..6433545 (21 bp)
TCGACCAAATTCCATAATAGTTCTT
NONE
Os.10698.1.S1_s_at--966--3151Chr03:18122050..18122074 (25 bp)
AATTCCATAATAGTTCTTGTTGCAA
LOC_Os03g31760
Os.10698.1.S1_s_at--653--1211Chr03:18122039..18122063 (25 bp)
AGTTCTTGTTGCAATAAAAACCAGG
LOC_Os03g31760
Target Sequence 
GTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGATCGATCAAAAGCACGTATATTAGCTAAAGACGATACTC
TACCAGTAGAGAAACTATCTTTTATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10698.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis