Browse Element(s) Details


Os.14955.1.S1_at

Description gb:CB642383
DB_XREF= gi:29637374
DB_XREF=OSJNEb02I15.r
CLONE=OSJNEb02I15
TID=Os.14955.1
CNT=17
FEA=EST
TIER=Stack
STK=6
UG=Os.14955 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179075.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3173011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31714OsAffx.11261.1.S1_at4/113+18072048..18073848NA
LOC_Os03g31730Os.14955.1.S1_at11/113+18085708..18098199expressed protein
LOC_Os03g31730Os.26358.2.S1_at1/113+18085708..18098199expressed protein
LOC_Os03g31740NANA3+18102958..18103695hypothetical protein
LOC_Os03g31750Os.12528.1.S1_x_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31750OsAffx.13147.1.S1_s_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31760OsAffx.22964.1.S1_at11/113+18121362..18126203expressed protein
LOC_Os03g31760Os.10698.1.S1_s_at11/113+18121362..18126203expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14955.1.S1_at--1038--1631Chr03:18097507..18097531 (25 bp)
AGCGTTGAACAGTCTCATAACCGAA
LOC_Os03g31730
Os.14955.1.S1_at--853--5131Chr03:18097532..18097556 (25 bp)
GCAAACCTTATGAAGACAGCTCTTG
LOC_Os03g31730
Os.14955.1.S1_at--646--9991Chr03:18097560..18097584 (25 bp)
TAGCTCTCCCCGTAAGCTGGTTAGG
LOC_Os03g31730
Os.14955.1.S1_at--969--6331Chr03:18097595..18097619 (25 bp)
GATGCTATTACTAGTGATGCTCTCT
LOC_Os03g31730
Os.14955.1.S1_at--139--6351Chr03:18097610..18097634 (25 bp)
GATGCTCTCTATGATCCATCTGAAT
LOC_Os03g31730
Os.14955.1.S1_at--941--5231Chr03:18097631..18097655 (25 bp)
GAATCACCTAAATCATCGAAGTCAG
LOC_Os03g31730
Os.14955.1.S1_at--130--5971Chr03:18097855..18097879 (25 bp)
GAGAAGGATGTACTGCACGCCCATT
LOC_Os03g31730
Os.14955.1.S1_at--670--1531Chr03:18097968..18097992 (25 bp)
AGCATGTCCATTAAATTGTTTCCAA
LOC_Os03g31730
Os.14955.1.S1_at--446--6851Chr03:18097985..18098009 (25 bp)
GTTTCCAAATGTCCGAACTCGTAGG
LOC_Os03g31730
Os.14955.1.S1_at--295--2191Chr03:18098024..18098048 (25 bp)
ACAAATGTCCGAACTCGTAGGAACT
LOC_Os03g31730
Os.14955.1.S1_at--485--31Chr03:18098128..18098152 (25 bp)
ATTGGAGTAATCACAGCTGTCCTGT
LOC_Os03g31730
Target Sequence 
AGCGTTGAACAGTCTCATAACCGAAGCAAACCTTATGAAGACAGCTCTTGGTGTAGCTCTCCCCGTAAGCTGGTTAGGGG
ATTCATCAGATGCTATTACTAGTGATGCTCTCTATGATCCATCTGAATCACCTAAATCATCGAAGTCAGAGAAACAAGAC
CCCCTCAGCTNTGCGGGCATGGAAATGGTGGAGCTACTAATATTAGCTGCTGATATCCTCAAGGATAGCTTTATATTGAA
TAACAAATAGGTGAGAAGGATGTACTGCACGCCCATTGATGGCAAGCTGAGTATCTGGAAGCGCAAGGAGTGAGTTTANA
GTCATACTTTTTCATGTGGATACTGTAGAATTAGAATACAGAAAAAGCATGTCCATTAAATTGTTTCCAAATGTCCGAAC
TCGTAGGAACTAAATTTGGAAACAAATGTCCGAACTCGTAGGAACTAAATTTGCAAAGAGTGTTGTAGTGCAATCAATAA
TTTAGTCCTGAAAGGGATTAACGTTTGGTGTATATACGTCAATTGATTGGAGTAATCACAGCTGTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis