Browse Element(s) Details


OsAffx.22964.1.S1_at

Description gb:AK111483.1
DB_XREF= gi:32996696
TID=OsAffx.22964.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B10, full insert sequence.
FL= gb:AK111483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3176011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31730Os.14955.1.S1_at11/113+18085708..18098199expressed protein
LOC_Os03g31730Os.26358.2.S1_at1/113+18085708..18098199expressed protein
LOC_Os03g31740NANA3+18102958..18103695hypothetical protein
LOC_Os03g31750Os.12528.1.S1_x_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31750OsAffx.13147.1.S1_s_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31760OsAffx.22964.1.S1_at11/113+18121362..18126203expressed protein
LOC_Os03g31760Os.10698.1.S1_s_at11/113+18121362..18126203expressed protein
LOC_Os03g31770NANA3+18130048..18130290retrotransposon protein, putative, unclassified
LOC_Os03g31780OsAffx.13147.1.S1_s_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31780OsAffx.13147.1.S1_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31790OsAffx.13148.1.S1_at11/113+18138132..18138422hypothetical protein
LOC_Os03g31800OsAffx.29316.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800OsAffx.6261.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.27691.2.S1_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.7329.1.S1_s_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31810OsAffx.25330.1.S1_at9/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.16709.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.8676.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.23566.1.S1_at1/113+18151103..18152794hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22964.1.S1_at--550--5911Chr03:18121892..18121916 (25 bp)
GAGCTATTTCTAGTTCCGGTTGTTA
LOC_Os03g31760
OsAffx.22964.1.S1_at--494--2331Chr03:18121852..18121876 (25 bp)
AAAGATCCGCATGCGCGGAGAGGAT
LOC_Os03g31760
OsAffx.22964.1.S1_at--784--6211Chr03:18121827..18121851 (25 bp)
GAGGCGTGCGCGCAACATCGAGGAG
LOC_Os03g31760
OsAffx.22964.1.S1_at--345--8013Chr12:6433277..6433297 (21 bp)
GGAGGCGCACGGGATAAGTTAATAA
NONE
OsAffx.22964.1.S1_at--733--67515Chr12:7491803..7491827 (25 bp)
GTTAATAAGTTCTATCTCCTCCTCC
NONE
OsAffx.22964.1.S1_at--213--9311Chr03:18121680..18121704 (25 bp)
TCCCCACTTCTCAGGAAGCGGAGGC
LOC_Os03g31760
OsAffx.22964.1.S1_at--766--4711Chr03:18121568..18121592 (25 bp)
GCTGGCGCGGCTGCACGGATTTTTT
LOC_Os03g31760
OsAffx.22964.1.S1_at--1011--5271Chr03:18121491..18121515 (25 bp)
GAATGTATGATTCGATCTGTGTTGA
LOC_Os03g31760
OsAffx.22964.1.S1_at--136--6531Chr03:18121402..18121426 (25 bp)
GATTTGGGATGACCTATGTTGCTGT
LOC_Os03g31760
OsAffx.22964.1.S1_at--151--101311Chr09:1828840..1828864 (25 bp)
TATGTTGCTGTGAATGATTTGGGAT
NONE
OsAffx.22964.1.S1_at--2--10831Chr03:18121370..18121394 (25 bp)
TTGGGATAATGGACGTGAGGTATAC
LOC_Os03g31760
Target Sequence 
GAGCTATTTCTAGTTCCGGTTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCAA
CATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCTCACCTTTATCTCCTCTCCTCA
CTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCCCCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGC
CTCGCGCAGTGGCGGCGGCCTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGGT
GGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGATTCGATCTGTGTTGTCTGTGT
TGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGTTGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGT
TGTTGTGAATGATTTGGGATGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis