Browse Element(s) Details


OsAffx.13147.1.S1_at

Description tigr:9631.m03126
TID=OsAffx.13147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3178011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31750Os.12528.1.S1_x_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31750OsAffx.13147.1.S1_s_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31760OsAffx.22964.1.S1_at11/113+18121362..18126203expressed protein
LOC_Os03g31760Os.10698.1.S1_s_at11/113+18121362..18126203expressed protein
LOC_Os03g31770NANA3+18130048..18130290retrotransposon protein, putative, unclassified
LOC_Os03g31780OsAffx.13147.1.S1_s_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31780OsAffx.13147.1.S1_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31790OsAffx.13148.1.S1_at11/113+18138132..18138422hypothetical protein
LOC_Os03g31800OsAffx.29316.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800OsAffx.6261.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.27691.2.S1_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.7329.1.S1_s_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31810OsAffx.25330.1.S1_at9/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.16709.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.8676.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.23566.1.S1_at1/113+18151103..18152794hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016310biological_processphosphorylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13147.1.S1_at--1100--7351Chr03:18132496..18132520 (25 bp)
GTGAGGACGGGCATCGGGCTGTCGG
LOC_Os03g31780
OsAffx.13147.1.S1_at--215--4011Chr03:18132441..18132465 (25 bp)
CGTGCCAGCAGTGGACCCATGTGGA
LOC_Os03g31780
OsAffx.13147.1.S1_at--852--4411Chr03:18132438..18132462 (25 bp)
GCCAGCAGTGGACCCATGTGGACCA
LOC_Os03g31780
OsAffx.13147.1.S1_at--320--3411Chr03:18132436..18132460 (25 bp)
CAGCAGTGGACCCATGTGGACCACA
LOC_Os03g31780
OsAffx.13147.1.S1_at--315--7553Chr10:2868734..2868758 (25 bp)
GGGCGCCGACCGTTGGGAGCAGAGG
NONE
OsAffx.13147.1.S1_at--571--5813Chr10:2868727..2868751 (25 bp)
GACCGTTGGGAGCAGAGGAGCCGCC
NONE
OsAffx.13147.1.S1_at--94--7653Chr10:2868720..2868744 (25 bp)
GGGAGCAGAGGAGCCGCCCGTGGCC
NONE
OsAffx.13147.1.S1_at--771--4652Chr03:18132171..18132195 (25 bp)
GCGTCCACCTTGATGTTGGCGTTGC
LOC_Os03g31780
OsAffx.13147.1.S1_at--893--7252Chr03:18132169..18132193 (25 bp)
GTCCACCTTGATGTTGGCGTTGCCG
LOC_Os03g31780
OsAffx.13147.1.S1_at--546--3372Chr03:18132166..18132190 (25 bp)
CACCTTGATGTTGGCGTTGCCGTTG
LOC_Os03g31780
OsAffx.13147.1.S1_at--1116--9171Chr03:18132149..18132173 (25 bp)
TGCCGTTGGCGACCAGGGCCTTGAG
LOC_Os03g31780
Target Sequence 
GTGAGGACGGGCATCGGGCTGTCGGTGCCGCCGGGGTTCACGGTGTCGACGGAGGCGTGCCAGCAGTGGACCCATGTGGA
CCACACGTCATCCTCACTAACCTCTTCTCTCTATCCTCTCTCTCCCTCTTCTCTCTCTCCAGCCGACGGAGCGGGGTGGG
CGGCGGCCGGAGCGGGCGATGGCGGGGCGGAGCCGAGGAGCGAAGCGGCGCGCCGGCCGGCGGGGGAGAAGTCGCGGCGC
GGCGGTGGCCGGAGGGGCGTGGGGCGCCGACCGTTGGGAGCAGAGGAGCCGCCCGTGGCCCGCGGCCGTCTGCGGGTGCG
TGCCGGCGTCCACCTTGATGTTGGCGTTGCCGTTGGCGACCAGGGCCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis