Browse Element(s) Details


Os.12602.1.S1_at

Description gb:M87064.1
DB_XREF= gi:169820
GEN=Rictpi
TID=Os.12602.1
CNT=118
FEA=FLmRNA
TIER=FL+Stack
STK=26
UG=Os.12602 (NCBI UniGene Cluster)
DEF=Oryza sativa triosephosphate isomerase (Rictpi) mRNA, complete cds.
PROD=triosephosphate isomerase
FL= gb:M87064.1 gb:AK060920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0549011/11Triosephosphate isomerase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05420Os.54683.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05420Os.16530.1.S1_at11/111+2557699..2562175IWS1 C-terminus family protein, expressed
LOC_Os01g05430OsAffx.23124.2.S1_s_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05430OsAffx.23124.1.S1_at11/111+2563506..2566252Rhomboid family protein, expressed
LOC_Os01g05440OsAffx.22780.1.S1_x_at11/111+2566874..2568799XH domain containing protein, expressed
LOC_Os01g05450OsAffx.22779.1.S1_at11/111+2569851..2571003hypothetical protein
LOC_Os01g05450OsAffx.23031.1.S1_s_at1/111+2569851..2571003hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_s_at11/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.2.S1_at8/111+2572385..2575012hypothetical protein
LOC_Os01g05460OsAffx.23031.1.S1_at7/111+2572385..2575012hypothetical protein
LOC_Os01g05460Os.12614.1.A1_at1/111+2572385..2575012hypothetical protein
LOC_Os01g05470Os.18514.1.S1_at11/111+2576367..2580377XS domain containing protein, expressed
LOC_Os01g05480Os.31681.1.S1_at11/111+2581788..2584497ternary complex factor MIP1, putative, expressed
LOC_Os01g05490Os.22886.1.A1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05490Os.12602.1.S1_at11/111+2586456..2590401Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004807molecular_functiontriose-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12602.1.S1_at--792--6451Chr01:2587490..2587514 (25 bp)
GATCAAGGATTGGACTAATGTGGTT
LOC_Os01g05490
Os.12602.1.S1_at--929--6591Chr01:2587483..2587507 (25 bp)
GATTGGACTAATGTGGTTGTTGCCT
LOC_Os01g05490
Os.12602.1.S1_at--244--8131Chr01:2587479..2587503 (25 bp)
GGACTAATGTGGTTGTTGCCTATGA
LOC_Os01g05490
Os.12602.1.S1_at--1014--2011Chr01:2587477..2587501 (25 bp)
ACTAATGTGGTTGTTGCCTATGAAC
LOC_Os01g05490
Os.12602.1.S1_at--1155--6271Chr01:2587030..2587054 (25 bp)
GATGTTGATGGTTTTCTCGTCGGTG
LOC_Os01g05490
Os.12602.1.S1_at--438--731Chr01:2587029..2587053 (25 bp)
ATGTTGATGGTTTTCTCGTCGGTGG
LOC_Os01g05490
Os.12602.1.S1_at--221--6251Chr01:2587024..2587048 (25 bp)
GATGGTTTTCTCGTCGGTGGTGCTT
LOC_Os01g05490
Os.12602.1.S1_at--741--9591Chr01:2586804..2586828 (25 bp)
TCATACCTTTTTCTGTGCTTATGTA
LOC_Os01g05490
Os.12602.1.S1_at--301--311Chr01:2586802..2586826 (25 bp)
ATACCTTTTTCTGTGCTTATGTAAT
LOC_Os01g05490
Os.12602.1.S1_at--346--1751Chr01:2586800..2586824 (25 bp)
ACCTTTTTCTGTGCTTATGTAATGC
LOC_Os01g05490
Os.12602.1.S1_at--777--3671Chr01:2586798..2586822 (25 bp)
CTTTTTCTGTGCTTATGTAATGCTA
LOC_Os01g05490
Target Sequence 
GATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATC
AAGCACAAGAAGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATC
ATCTATGGAGGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGG
TGCTTCATTGAAGCCTGAATTCATNCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGATCTTCACCCCATTCAC
CTTNGGCGTGGGAAGATGTCTGAAGAGGATCATACCTTTTTCTGTGCTTATGTAATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis