Browse Element(s) Details


Os.12624.1.S1_s_at

Description gb:AF058796.1
DB_XREF= gi:3075487
GEN=RCABP69
TID=Os.12624.1
CNT=191
FEA=FLmRNA
TIER=FL+Stack
STK=40
UG=Os.12624 (NCBI UniGene Cluster)
DEF=Oryza sativa chlorophyll ab-binding protein (RCABP69) mRNA, complete cds.
PROD=chlorophyll ab-binding protein
FL= gb:AK104619.1 gb:AK119534.1 gb:AK104309.1 gb:AF058796.1 gb:AK058293.1 gb:AK098992.1 gb:AK103924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3724011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37210Os.3390.1.S1_at7/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37210Os.57514.1.S1_x_at1/117+22292042..22293615Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g37220Os.51989.1.S1_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37220Os.51989.1.S2_at11/117+22302166..22306982PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37230Os.27580.1.S1_at10/117+22307726..22311869PAP-specific phosphatase, mitochondrial precursor, putative, expressed
LOC_Os07g37240Os.12624.1.S1_s_at11/117+22314578..22316241expressed protein
LOC_Os07g37250Os.13481.1.S1_s_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.37267.1.S1_at11/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37250Os.13481.1.S1_at10/117+22317345..22321480chloroplast inositol phosphatase, putative, expressed
LOC_Os07g37260OsAffx.28794.1.S1_at11/117+22329649..22331170hypothetical protein
LOC_Os07g37270Os.46448.1.S1_at11/117+22332247..22336738Membrane associated protein, putative, expressed
LOC_Os07g37280Os.11147.1.S1_at11/117+22338281..22339707expressed protein
LOC_Os07g37280OsAffx.28795.1.S1_at10/117+22338281..22339707expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0015979biological_processphotosynthesis
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12624.1.S1_s_at--1015--451Chr07:22315227..22315251 (25 bp)
ATCTCGACGCTGATCTGGATCGAGG
LOC_Os07g37240
Os.12624.1.S1_s_at--1072--4131Chr07:22315220..22315244 (25 bp)
CGCTGATCTGGATCGAGGTGCTCGT
LOC_Os07g37240
Os.12624.1.S1_s_at--961--9491Chr07:22314929..22314953 (25 bp)
TCTCCTCATCCTCTTAATTTAAGCT
LOC_Os07g37240
Os.12624.1.S1_s_at--1096--9731Chr07:22314915..22314939 (25 bp)
TAATTTAAGCTCTTTCGCGCGCAAT
LOC_Os07g37240
Os.12624.1.S1_s_at--628--9551Chr07:22314905..22314929 (25 bp)
TCTTTCGCGCGCAATTCAAACGGGA
LOC_Os07g37240
Os.12624.1.S1_s_at--440--4571Chr07:22314899..22314923 (25 bp)
GCGCGCAATTCAAACGGGATCGATG
LOC_Os07g37240
Os.12624.1.S1_s_at--1061--9331Chr07:22314861..22314885 (25 bp)
TCGCGCGCGCTGTTTAGTTTTGTGA
LOC_Os07g37240
Os.12624.1.S1_s_at--355--10051Chr07:22314847..22314871 (25 bp)
TAGTTTTGTGATGACGAGCGAGCTG
LOC_Os07g37240
Os.12624.1.S1_s_at--800--6151Chr07:22314803..22314827 (25 bp)
GAGGTCATCCTTTTGTTGATTACTA
LOC_Os07g37240
Os.12624.1.S1_s_at--255--6611Chr07:22314759..22314783 (25 bp)
GTTGGTGGTTAATGGCGACTTGCAT
LOC_Os07g37240
Os.12624.1.S1_s_at--156--4611Chr07:22314745..22314769 (25 bp)
GCGACTTGCATGGTGGTGATTTGTA
LOC_Os07g37240
Target Sequence 
ATCTCGACGCTGATCTGGATCGAGGTGCTCGTCATCGGCTACANTCGAGTTCCAGCGCAACGCGGAGCTGGACCCGGAGA
AGAGGCTGTACCCGGGGGGGTCCTACTTCGACCCGCTCGGGTTGGCGTCGGACCCGGAGAAGAAGGAGCGGCTGCAGCTG
GCGGAGATCAAGCACGCCCGCCTCGCCATGGTCGCCTTCCTCGGCTTCGCCGTGCAGGCCGCCGCCACCGGCAAGGGGCC
CCTCAACAACTGGGCCACCCACCTCAGCGACCCGCTCCACACCACCATCTTCGACACCTTCTCCTCATCCTCTTAATTTA
AGCTCTTTCGCGCGCAATTCAAACGGGATCGATGCGTTGGTGTGCGTTCGCGCGCGCTGTTTAGTTTTGTGATGACGAGC
GAGCTGGGAGGGTATGGAGAGAGGAGAGGTCATCCTTTTGTTGATTACTACTTAAATTAGGAAAGCTGGGTTGGTGGTTA
ATGGCGACTTGCATGGTGGTGATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12624.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis