Browse Element(s) Details


Os.12634.1.S1_at

Description gb:AK111766.1
DB_XREF= gi:37988429
TID=Os.12634.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063C15, full insert sequence.
FL= gb:AK112001.1 gb:AK111766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4258011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42540Os.8094.1.S1_at11/118+26750112..26754520Ubiquitin thiolesterase protein OTUB1, putative, expressed
LOC_Os08g42550Os.49952.1.S1_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42550Os.7329.1.S1_s_at11/118+26754970..26762649AP2 domain containing protein, expressed
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42610Os.11761.1.S1_at11/118+26799468..26802402PPR986-12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12634.1.S1_at--115--10311Chr08:26779879..26779903 (25 bp)
TTTCTCCTAAGGTTGACGTCTACGC
LOC_Os08g42580
Os.12634.1.S1_at--478--10231Chr08:26779905..26779929 (25 bp)
TTTGGTGTTGTCCTCTACGAACTTA
LOC_Os08g42580
Os.12634.1.S1_at--270--5431Chr08:26779941..26779965 (25 bp)
GAAGCCATAGTCAGATCAACCGAAT
LOC_Os08g42580
Os.12634.1.S1_at--241--6591Chr08:26780169..26780291 (25 bp)
GATTCCATTCTCAAGCTGACACAAC
LOC_Os08g42580
Os.12634.1.S1_at--224--7351Chr08:26780302..26780326 (25 bp)
GTGCACACAAGAAGACCCCAAGCTG
LOC_Os08g42580
Os.12634.1.S1_at--752--8431Chr08:26780328..26780352 (25 bp)
GGCCTTCAATGAGATCCGTGGTCGT
LOC_Os08g42580
Os.12634.1.S1_at--749--8931Chr08:26780361..26780385 (25 bp)
TGACGCTTTCATCCACAAGTGAGTT
LOC_Os08g42580
Os.12634.1.S1_at--242--6851Chr08:26780418..26780442 (25 bp)
GTTTGGTCAACCTAATGTCCGGGAG
LOC_Os08g42580
Os.12634.1.S1_at--375--6051Chr08:26780440..26780464 (25 bp)
GAGATAGTGACTTTGGTGCCGCCTG
LOC_Os08g42580
Os.12634.1.S1_at--1076--9151Chr08:26780456..26780480 (25 bp)
TGCCGCCTGCACACTGGGAAAATTG
LOC_Os08g42580
Os.12634.1.S1_at--192--10291Chr08:26780554..26780578 (25 bp)
TTTGCTGTTCCTACTTAGAGACCTT
LOC_Os08g42580
Target Sequence 
TTTCTCCTAAGGTTGACGTCTACGCCTTTGGTGTTGTCCTCTACGAACTTATTTCAGCGAAAGAAGCCATAGTCAGATCA
ACCGAATCTTCAAGTGATTCAAAGGGGCTGGTTTATCTGTTTGAGGAGGCCCTCAACTCGCCGGATCCCAAGGAAGGCCT
TAGGACGTTGATTGATCCAAAGCTAGGAGAAGATTATCCTATTGATTCCATTCTCAAGCTGACACAACTCGCAAAGGTGT
GCACACAAGAAGACCCCAAGCTGAGGCCTTCAATGAGATCCGTGGTCGTCGCGCTGATGACGCTTTCATCCACAAGTGAG
TTCTGGGACATGAACAACCTGTATGAGAACCAAGGTTTGGTCAACCTAATGTCCGGGAGATAGTGACTTTGGTGCCGCCT
GCACACTGGGAAAATTGTACATTCAGGCTCATCTGAAGTGTGTAATGACAGCCATTACATTGTTTTGTCATCTTTGTTAT
TCTTTTCTTTTTTGCTGTTCCTACTTAGAGACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis