Browse Element(s) Details


Os.12680.1.S1_at

Description gb:AK066778.1
DB_XREF= gi:32976796
TID=Os.12680.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079M07, full insert sequence.
FL= gb:AK066778.1 gb:AK069486.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4384011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43800Os.54844.1.S1_at11/115+25381341..25383227expressed protein
LOC_Os05g43810OsAffx.26001.4.S1_at11/115+25383841..25388015hypothetical protein
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12680.1.S1_at--451--5171Chr05:25407822..25407846 (25 bp)
GCAAGCATGAACACCTGAGAGGCAA
LOC_Os05g43840
Os.12680.1.S1_at--408--6471Chr05:25407850..25407874 (25 bp)
GATACCCAATTCCTTTAGACCAGTG
LOC_Os05g43840
Os.12680.1.S1_at--964--9051Chr05:25407887..25407911 (25 bp)
TGCTGTTCGTTTCTTCAATCGAAAT
LOC_Os05g43840
Os.12680.1.S1_at--802--9691Chr05:25407947..25407971 (25 bp)
TCAAATGTCTGTTTTTAGCTGTTAC
LOC_Os05g43840
Os.12680.1.S1_at--602--10031Chr05:25408027..25408051 (25 bp)
TAGACTTTTATGTATGCCGCAGCAG
LOC_Os05g43840
Os.12680.1.S1_at--328--5031Chr05:25408048..25408072 (25 bp)
GCAGTGCAGCCATTTGTATTTCTAT
LOC_Os05g43840
Os.12680.1.S1_at--711--3691Chr05:25408069..25408093 (25 bp)
CTATGCTGCCAGTTAGTTCTCTGAA
LOC_Os05g43840
Os.12680.1.S1_at--1159--6631Chr05:25408220..25408244 (25 bp)
GTTGTTTATTACTTCTGTGCATCAA
LOC_Os05g43840
Os.12680.1.S1_at--280--5271Chr05:25408248..25408272 (25 bp)
GAATGCACACTTCTGTATACCATTG
LOC_Os05g43840
Os.12680.1.S1_at--547--311Chr05:25408264..25408288 (25 bp)
ATACCATTGTTGTGCTACCTTTTGT
LOC_Os05g43840
Os.12680.1.S1_at--1155--9911Chr05:25408303..25408327 (25 bp)
TACTGTATACTGGTGTTGTGGAAAC
LOC_Os05g43840
Target Sequence 
GCAAGCATGAACACCTGAGAGGCAAAATGATACCCAATTCCTTTAGACCAGTGTCCATGTTTTGGTGCTGTTCGTTTCTT
CAATCGAAATGATGTATGCTAGTGTTTGCATGCTAATATCAGCTATCAAATGTCTGTTTTTAGCTGTTACAGTTTAAAGA
GAGTGACAAATCTGAGTATATGGCATCAGTATCAATGAAGTGGACTAGACTTTTATGTATGCCGCAGCAGTGCAGCCATT
TGTATTTCTATGCTGCCAGTTAGTTCTCTGAATACATATGACATCAACACTGAAGAAATTAGCTCGAAGTGCTCTAAAGA
AGTTCTGTTTTGGGATTAAAATTGTAAATATAGGGTGAATGAATAAATTAGNCAAAGCGTTAGCATTCTAAGTATCTAGT
TGTTTATTACTTCTGTGCATCAATTTGAATGCACACTTCTGTATACCATTGTTGTGCTACCTTTTGTTTAAGTAACTCAA
ATACTGTATACTGGTGTTGTGGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis