Browse Element(s) Details


Os.12684.1.S1_at

Description gb:AK073169.1
DB_XREF= gi:32983192
TID=Os.12684.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033020B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033020B11, full insert sequence.
FL= gb:AK073169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0202011/11Protein kinase APK1A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01970Os.15723.1.S1_a_at11/115+530063..539815expressed protein
LOC_Os05g01990Os.19569.1.S1_x_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.1.S1_at11/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g01990Os.19569.2.S1_at10/115+540918..544846DEAD/DEAH box helicase, putative, expressed
LOC_Os05g02000Os.46937.1.S1_at11/115+546832..550544expressed protein
LOC_Os05g02010Os.11999.1.S1_at11/115+552864..554918expressed protein
LOC_Os05g02020Os.12684.1.S1_at11/115+555189..558490Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os05g02030OsAffx.14496.1.S1_at11/115+568308..569829OB-fold nucleic acid binding domain containing protein
LOC_Os05g02040Os.53618.1.S1_at11/115+571398..575870replication factor-a protein 1 containing protein, expressed
LOC_Os05g02050OsAffx.26687.1.S1_at11/115+577402..577786Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed
LOC_Os05g02060Os.10155.1.S1_at11/115+578361..581363amino acid selective channel protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12684.1.S1_at--1045--5291Chr05:555710..555734 (25 bp)
GAAGGCTGCAACACTGGCACTTCAA
LOC_Os05g02020
Os.12684.1.S1_at--254--8251Chr05:555695..555719 (25 bp)
GGCACTTCAATGCATCTCTGTGGAG
LOC_Os05g02020
Os.12684.1.S1_at--386--7611Chr05:555600..555624 (25 bp)
GGGCAAATCCTCAGCTGCAGAAGAA
LOC_Os05g02020
Os.12684.1.S1_at--223--8251Chr05:555556..555580 (25 bp)
GGCAGCAATGGATCGAAACCGTCAT
LOC_Os05g02020
Os.12684.1.S1_at--893--4511Chr05:555521..555545 (25 bp)
GCCCGCAAATGCGAGGCTGGTTTAA
LOC_Os05g02020
Os.12684.1.S1_at--827--6051Chr05:555411..555435 (25 bp)
GAGTTGTGAATCCTTGGTGCTTGCC
LOC_Os05g02020
Os.12684.1.S1_at--83--7311Chr05:555395..555419 (25 bp)
GTGCTTGCCTGTTTTAGTTGTTTTT
LOC_Os05g02020
Os.12684.1.S1_at--61--1251Chr05:555380..555404 (25 bp)
AGTTGTTTTTGCAGCTTCTAGTCAG
LOC_Os05g02020
Os.12684.1.S1_at--721--791Chr05:555333..555357 (25 bp)
ATGTGGTCGCCTATATCTGCATGCA
LOC_Os05g02020
Os.12684.1.S1_at--487--2491Chr05:555238..555262 (25 bp)
AACAGATGTGCCCAGATCCAGTTTT
LOC_Os05g02020
Os.12684.1.S1_at--316--2691Chr05:555194..555218 (25 bp)
AAGCTGCCCCAGATCATATTTTTGA
LOC_Os05g02020
Target Sequence 
GAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTAT
TAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGC
AATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCA
GATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCT
TGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATG
CATTCAGTTCAGTGCATTGTGGATTGTNCAGTTTATATCTAGTTNTAATGCTGCGAAATTTTTGTTCGAGGCAACAGATG
TGCCCAGATCCAGTTTTTCCTGATTTTTAAANCTACAAGCTGCCCCAGATCATATTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis