Browse Element(s) Details


Os.12690.1.S1_at

Description gb:AK072460.1
DB_XREF= gi:32982483
TID=Os.12690.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative thiolase (OSJNBa0018F16.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121H13, full insert sequence.
FL= gb:AK072460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3195011/113-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31900Os.5866.1.S1_at11/1110+16421355..16425794Splicing factor 3B subunit 4, putative, expressed
LOC_Os10g31910OsAffx.18481.1.S1_x_at11/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31910OsAffx.18481.2.S1_at1/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006635biological_processfatty acid beta-oxidation
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010111biological_processglyoxysome organization and biogenesis
GO:0019395biological_processfatty acid oxidation
GO:0005739cellular_componentmitochondrion
GO:0003988molecular_functionacetyl-CoA C-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12690.1.S1_at--578--7351Chr10:16449516..16449540 (25 bp)
GTGCAATGGCTCTTGGGCATCCATT
LOC_Os10g31950
Os.12690.1.S1_at--261--4971Chr10:16449532..16449553 (22 bp)
GCATCCATTGGGTGCTACAGGTGCA
LOC_Os10g31950
Os.12690.1.S1_at--327--9871Chr10:16449671..16449693 (23 bp)
TACAGGTGCACGGTCTGTCAGTACC
LOC_Os10g31950
Os.12690.1.S1_at--182--8711Chr10:16449684..16449708 (25 bp)
TGTCAGTACCCTTCTCAACGAAATG
LOC_Os10g31950
Os.12690.1.S1_at--289--9811Chr10:16449928..16449952 (25 bp)
TAACCGGCTTTCGAAGGACGCCATG
LOC_Os10g31950
Os.12690.1.S1_at--416--7351Chr10:16449986..16450010 (25 bp)
GTGCAACTGCCACTATTGTTTGAAA
LOC_Os10g31950
Os.12690.1.S1_at--184--6911Chr10:16450044..16450068 (25 bp)
GTATCTGTAATCTCATCCAGCTCTG
LOC_Os10g31950
Os.12690.1.S1_at--38--591Chr10:16450058..16450082 (25 bp)
ATCCAGCTCTGAACTTGGCTAGTTG
LOC_Os10g31950
Os.12690.1.S1_at--842--2431Chr10:16450123..16450147 (25 bp)
AAAAGTTGTCCCTTGTCAGCCTGTT
LOC_Os10g31950
Os.12690.1.S1_at--611--3551Chr10:16450148..16450172 (25 bp)
CATCTGATTACCTTTTGCTTTCGAA
LOC_Os10g31950
Os.12690.1.S1_at--82--2671Chr10:16450214..16450238 (25 bp)
AAGCCTGATGCATATGACGCGGGAT
LOC_Os10g31950
Target Sequence 
GTGCAATGGCTCTTGGGCATCCATTGGGTGCTACAGGTGCACGGTCTGTCAGTACCCTTCTCAACGAAATGAAGCGACGG
GGCAAAGACTGTCGATTTGGTGTGATTTCCATGTGCATAGGTTCTGGCATGGGGGCTGCTGCTGTCTTTGAGCGTGGGGA
TGCAGTGGATGAGCTCACTAATGCTCGGTGCATCCCGACCCATAACCGGCTTTCGAAGGACGCCATGTAACTAGAACTAT
ATATATATGTCATAAAAATTGTGCAACTGCCACTATTGTTTGAAATATCAACACNAAGAGTAGGGAATAAAACGCTTGTG
TATCTGTAATCTCATCCAGCTCTGAACTTGGCTAGTTGGAGAATCCTTGTTAATTAGGAAATTCATGCATAATAACTCAA
AAGTTGTCCCTTGTCAGCCTGTTCATCTGATTACCTTTTGCTTTCGAAAGTTATCAGATGATTGTCTATTTGTATCAGAA
AATGTTGTGAAGCCTGATGCATATGACGCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis