Browse Element(s) Details


Os.12705.1.S1_at

Description gb:AK065578.1
DB_XREF= gi:32975596
TID=Os.12705.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transformer serinearginine-rich ribonucleoprotein (OJ1012B02.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full insert sequence.
FL= gb:AK065578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1589010/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15910Os.37394.1.S1_at3/113+8767687..8768082hypothetical protein
LOC_Os03g15920Os.10388.1.S1_at11/113+8767701..8769431expressed protein
LOC_Os03g15930Os.15901.1.S1_at11/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_x_at9/113+8769800..8774784OTU-like cysteine protease family protein, expressed
LOC_Os03g15930Os.15901.2.S1_at8/113+8769800..8774784OTU-like cysteine protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005654cellular_componentnucleoplasm
GO:0005681cellular_componentspliceosome complex
GO:0016607cellular_componentnuclear speck
GO:0030529cellular_componentribonucleoprotein complex
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12705.1.S1_at--634--2351Chr03:8746847..8746871 (25 bp)
AAAGCTCTCTATGCCTAAGTGTATG
LOC_Os03g15890
Os.12705.1.S1_at--120--6931Chr03:8746827..8746851 (25 bp)
GTATGTCTGTATCTCGTGAAGCTTA
LOC_Os03g15890
Os.12705.1.S1_at--726--7351Chr03:8746812..8746836 (25 bp)
GTGAAGCTTACTTTGCACCTGTTTC
LOC_Os03g15890
Os.12705.1.S1_at--1020--3671Chr03:8746802..8746826 (25 bp)
CTTTGCACCTGTTTCCAACTTAGAA
LOC_Os03g15890
Os.12705.1.S1_at--595--5551Chr03:8746780..8746804 (25 bp)
GAAACCGTGTACCATAATATTTGTG
LOC_Os03g15890
Os.12705.1.S1_at--807--231Chr03:8746764..8746788 (25 bp)
ATATTTGTGTCGTATTGTATCGGAT
LOC_Os03g15890
Os.12705.1.S1_at--51--6831Chr03:8746729..8746753 (25 bp)
GTTTATGCTTACTTTCGTAGGCAGA
LOC_Os03g15890
Os.12705.1.S1_at--554--8251Chr03:8746710..8746734 (25 bp)
GGCAGATATTATTGGTGGTTCGTTA
LOC_Os03g15890
Os.12705.1.S1_at--658--7491Chr03:8746696..8746720 (25 bp)
GTGGTTCGTTATGGTGTCCAGATCT
LOC_Os03g15890
Os.12705.1.S1_at--1085--6891Chr03:8746637..8746661 (25 bp)
GTATCAGGTTCTGTTATGCTGTCAT
LOC_Os03g15890
Os.12705.1.S1_at--1016--8771Chr03:8746626..8746650 (25 bp)
TGTTATGCTGTCATTTTCGCAGGCA
NONE
Target Sequence 
AAAGCTCTCTATGCCTAAGTGTATGTCTGTATCTCGTGAAGCTTACTTTGCACCTGTTTCCAACTTAGAAACCGTGTACC
ATAATATTTGTGTCGTATTGTATCGGATACTTCTATATGTTTATGCTTACTTTCGTAGGCAGATATTATTGGTGGTTCGT
TATGGTGTCCAGATCTACAATCTGTAGCATATTGATACTTACTGTGTGTTGTATCAGGTTCTGTTATGCTGTCATTTTCG
CAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis