Browse Element(s) Details


Os.12710.1.S1_at

Description gb:AK065604.1
DB_XREF= gi:32975622
TID=Os.12710.1
CNT=58
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034F24, full insert sequence.
FL= gb:AK065604.1 gb:AK068566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4237011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12710.1.S1_at--522--631Chr07:25347744..25347876 (25 bp)
ATGCTTCTGATATGCCTATTGCTAG
LOC_Os07g42370
Os.12710.1.S1_at--553--10091Chr07:25347874..25347898 (25 bp)
TAGGAAGGCATCACTCCACAGGTTC
LOC_Os07g42370
Os.12710.1.S1_at--549--3651Chr07:25348047..25348071 (25 bp)
CTTCAGATGCAACCCCAGTCAAGAA
LOC_Os07g42370
Os.12710.1.S1_at--27--5451Chr07:25348108..25348132 (25 bp)
GAACGCCGTCGTGAAGCCCATAGAA
LOC_Os07g42370
Os.12710.1.S1_at--992--10011Chr07:25348128..25348152 (25 bp)
TAGAACGCGGCCAATGAGGTTGCAT
LOC_Os07g42370
Os.12710.1.S1_at--738--3011Chr07:25348187..25348211 (25 bp)
AATGCGCTTGCCGTTAGAGTACCAA
LOC_Os07g42370
Os.12710.1.S1_at--972--9491Chr07:25348223..25348247 (25 bp)
TCTCTCATACCCCATGTTTTAGTGT
LOC_Os07g42370
Os.12710.1.S1_at--649--1231Chr07:25348257..25348281 (25 bp)
AGTTCGTGCTTCTATGTTGTTCACT
LOC_Os07g42370
Os.12710.1.S1_at--179--6651Chr07:25348272..25348296 (25 bp)
GTTGTTCACTTGTCACATAGTTCTG
LOC_Os07g42370
Os.12710.1.S1_at--937--6951Chr07:25348316..25348340 (25 bp)
GTAGCATTGACGACCAGTGCCGAGA
LOC_Os07g42370
Os.12710.1.S1_at--842--3151Chr07:25348440..25348464 (25 bp)
AATTCTGATCATCTGGCTTTGTCCT
LOC_Os07g42370
Target Sequence 
ATGCTTCTGATATGCCTATTGCTAGGAAGGCATCACTCCACAGGTTCCTTGAGAAGAGAAAGGATCGTCTTAATGCAAAG
ACGCCATACCAGGCTTCTCCTTCAGATGCAACCCCAGTCAAGAAGGAGCCTGAGAGCCAGCCATGGCTCGGACTAGGGCC
GAACGCCGTCGTGAAGCCCATAGAACGCGGCCAATGAGGTTGCATGGAAACTTCACCAAAGCTCTTCAAAAATATATGAA
ATGCGCTTGCCGTTAGAGTACCAAATCATATATGTTCTCTCATACCCCATGTTTTAGTGTTTTTTCTTTAGTTCGTGCTT
CTATGTTGTTCACTTGTCACATAGTTCTGAATGTAAAGGAAAAAGGTAGTAGCATTGACGACCAGTGCCGAGAGCCTGAG
AGAAGTTTTGGCATGTTAACACATGGTGACTCTGAAAATGGCCATGCTAAGGTAAAAAGTTATTGCAAAGGAAACATATA
TGTATCTTCTGAAATTCTGATCATCTGGCTTTGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis