Browse Element(s) Details


Os.12716.1.S1_a_at

Description gb:AK119608.1
DB_XREF= gi:37989231
TID=Os.12716.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F07, full insert sequence.
FL= gb:AK098984.1 gb:AK119608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4613011/11Aspartyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46090Os.12641.1.S1_s_at11/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46090OsAffx.12515.1.S1_at8/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46100OsAffx.24747.1.S1_at11/112+28091110..28092152Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein
LOC_Os02g46120Os.52348.1.S1_at10/112+28102765..28107558regulatory protein, putative, expressed
LOC_Os02g46130Os.12716.1.S1_a_at11/112+28107762..28113117Aspartyl-tRNA synthetase, putative, expressed
LOC_Os02g46140Os.47398.2.A1_at11/112+28116496..28118283expressed protein
LOC_Os02g46150Os.47398.1.S1_at11/112+28117822..28122244Uncharacterised protein family containing protein, expressed
LOC_Os02g46159NANA2+28123823..28124520NA
LOC_Os02g46170OsAffx.25885.1.S1_at1/112+28127354..28128414hypothetical protein
LOC_Os02g46180Os.53154.1.S1_at11/112+28130478..28131590expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006421biological_processasparaginyl-tRNA aminoacylation
GO:0006422biological_processaspartyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004815molecular_functionaspartate-tRNA ligase activity
GO:0004816molecular_functionasparagine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12716.1.S1_a_at--259--531Chr02:28112230..28112388 (25 bp)
ATCGAATCGTTCAGCTATGGTGCAC
LOC_Os02g46130
Os.12716.1.S1_a_at--885--811Chr02:28112380..28112404 (25 bp)
ATGGTGCACCTCCTCATGGTGGTTT
LOC_Os02g46130
Os.12716.1.S1_a_at--395--8591Chr02:28112425..28112449 (25 bp)
TGGTAATGCTGTTCTGCGCCCTAAA
LOC_Os02g46130
Os.12716.1.S1_a_at--65--951Chr02:28112457..28112481 (25 bp)
AGGAAGACATCACTTTTCCCTCGCG
LOC_Os02g46130
Os.12716.1.S1_a_at--29--8351Chr02:28112491..28112515 (25 bp)
GGCTGGTGCCATAATTTGCTTTTTT
LOC_Os02g46130
Os.12716.1.S1_a_at--409--5171Chr02:28112524..28112548 (25 bp)
GCAAGGTTTGGACTCAGTACGGACT
LOC_Os02g46130
Os.12716.1.S1_a_at--372--9931Chr02:28112541..28112565 (25 bp)
TACGGACTGGGCAGTTTTCCTCGGC
LOC_Os02g46130
Os.12716.1.S1_a_at--436--8531Chr02:28112662..28112686 (25 bp)
TTGGAATAGGGCTCAACGTTGGCGT
LOC_Os02g46130
Os.12716.1.S1_a_at--345--10611Chr02:28112693..28112717 (25 bp)
TTCGTTGATGATTCCGCTATTCGTA
LOC_Os02g46130
Os.12716.1.S1_a_at--940--5251Chr02:28112726..28112750 (25 bp)
GAATCCAGAGCAGAAATGACCCTAT
LOC_Os02g46130
Os.12716.1.S1_a_at--438--2091Chr02:28112765..28112789 (25 bp)
ACATACTCGTATGCCTATATTTCCA
LOC_Os02g46130
Target Sequence 
ATCGAATCGTTCAGCTATGGTGCACCTCCTCATGGTGGTTTTGGTGTCGGCCTGGAGAGGGTGGTAATGCTGTTCTGCGC
CCTAAACAACATCAGGAAGACATCACTTTTCCCTCGCGATCCACAAAGGCTGGTGCCATAATTTGCTTTTTTTCCCAAGA
GCAAGGTTTGGACTCAGTACGGACTGGGCAGTTTTCCTCGGCTGGTTTTTTTACCTGGACATTATTTTCGTATTTATTAA
TGTGCTGTACTGCAAAAGCTGCTCCTTTCCACAACATTTGGAATAGTTGCCGATACATTTGGAATAGGGCTCAACGTTGG
CGTTGTGATTTCGTTGATGATTCCGCTATTCGTAACAATGGCGAATCCAGAGCAGAAATGACCCTATGTCAGAAACATAT
CACATACTCGTATGCCTATATTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12716.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis